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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Mendelian randomization followed by single-cell RNA sequencing exploration identifies effector memory CD4+ T cells as
Zhaolin Ren1, Hao He2, Zhichun Cai2
1Department of Neurology, Yuexi Hospital of the Sixth Affiliated Hospital, Sun Yat-sen University (Xinyi People's Hospital), Xinyi, Guangdong, China.
Abstract:
Myasthenia gravis (MG) is an autoimmune neuromuscular junction disease classified as early onset MG (EOMG), which typically occurs before the age of 50 years, and late-onset MG (LOMG), which occurs after the age of 50 years. The contribution of different immune cell subsets to MG pathogenesis is not fully understood. To address this, we conducted 2-sample Mendelian randomization (MR) analyses incorporating 731 peripheral immunophenotypes associated with MG. To further explore cellular mechanisms, we analyzed an existing single-cell RNA sequencing (scRNA-seq) dataset derived from the peripheral blood of patients with MG during and after the myasthenic crisis phase. In MR analyses, IVW results suggested that 42 immunophenotypes were risk or protective factors for LOMG, whereas 28 immunophenotypes were involved in EOMG. Comprehensive sensitivity analyses confirmed the absence of heterogeneity and horizontal pleiotropy. Among these, the proportion of effector memory CD4 + T cells emerged as the most significant factor associated with an increased risk of LOMG. Single-cell analyses revealed an expansion of these cells in patients with LOMG during the myasthenic crisis stage compared with the stable stage, with functional annotations showing strong similarities to activated CD4 + T cells treated with TGF-β and IL-4. This study identified effector memory CD4 + T cells as a significant risk factor for LOMG through MR analyses and further explored an existing scRNA-seq dataset. The role of effector memory CD4 + T cells, potentially mediated by TGF-β and IL-4, in LOMG pathogenesis and disease exacerbation, highlighting the need for further functional studies.
Insights
Late-onset myasthenia gravis (LOMG) risk is linked to effector memory CD4+ T cells. These cells expand during crisis, potentially influenced by TGF-β and IL-4, suggesting new therapeutic targets for this autoimmune neuromuscular junction disease.
Area of Science:
- Immunology
- Genetics
- Neurology
Background:
- Myasthenia gravis (MG) is an autoimmune neuromuscular junction disorder with early-onset (EOMG) and late-onset (LOMG) forms.
- The specific immune cell subsets contributing to MG pathogenesis remain incompletely understood.
Purpose of the Study:
- To investigate the causal relationship between peripheral immunophenotypes and MG subtypes using Mendelian randomization (MR).
- To explore the cellular mechanisms underlying LOMG pathogenesis, particularly during myasthenic crisis, using single-cell RNA sequencing (scRNA-seq).
Main Methods:
- Two-sample Mendelian randomization (MR) analyses were performed using 731 peripheral immunophenotypes.
- An existing scRNA-seq dataset from MG patients during and after crisis was analyzed for cellular insights.
Main Results:
- MR analysis identified 42 immunophenotypes associated with LOMG risk and 28 with EOMG risk.
- Effector memory CD4+ T cells were identified as a significant risk factor for LOMG.
- scRNA-seq revealed expansion of effector memory CD4+ T cells in LOMG patients during crisis, with functional similarities to TGF-β and IL-4 activated cells.
Conclusions:
- Effector memory CD4+ T cells are a key risk factor for LOMG, potentially playing a role in disease exacerbation.
- The findings suggest that TGF-β and IL-4 signaling pathways may be involved in LOMG pathogenesis.
- Further functional studies are warranted to elucidate the precise role of these T cells in LOMG.
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