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Author Spotlight: Investigating Liver Cancer Pathogenesis Using Patient-Derived Organoids
Published on: August 18, 2023
In-silico target prediction and pathway analysis of propranolol as a potential therapeutic agent for hepatocellular
Ishaq Ahmad1, Shakeel Ahmad Khan2, Muhammad Abu Bakar3
1School of Fashion and Textiles, The Hong Kong Polytechnic University, Hung Hom, Hong Kong Special Administrative Region, China.
Abstract:
Hepatocellular carcinoma (HCC) remains lethal despite multitargeted tyrosine kinase inhibitors and immunotherapy, motivating the repurposing of safe, widely available agents. To delineate the anti-HCC potential of propranolol through an in-silico network pharmacology and molecular structure-based study, 70 intersecting potential anti-HCC targets were retrieved from the SwissTargetPrediction and GeneCards databases. Protein-protein interaction (PPI) analysis identified a network of 64 interconnected nodes exhibiting a high average node degree of 9.84, highlighting target centrality. Subsequent hub analysis isolated nine pivotal proteins (SRC, EGFR, CCND1, JAK2, ERBB2, PARP1, CDK4, CDK2, CHEK1) with degree centrality values exceeding 23.2, more than twice the network average. Gene Ontology and KEGG enrichment analyses underscored robust involvement in oncogenic pathways, including PI3K-Akt, MAPK, and immune checkpoints. Molecular docking revealed strong binding affinities of propranolol toward key kinases, notably JAK2 (-8.14 kcalmol-1), ERBB2 (-7.80 kcalmol-1), EGFR (-7.76 kcalmol-1), and CDK2 (-7.44 kcalmol-1). Molecular dynamics simulations confirmed the complex stability, with RMSD values stably maintained below 4.5 Å over 100 ns simulations. The sustained hydrogen-bond occupancy ranged from 30% to 68% per trajectory, corroborating stable ligand engagement. Collectively, these factorial results provide compelling evidence that propranolol may interact with core oncogenic kinase cluster and potential modulation of the critical signaling cascades implicated in HCC pathogenesis. Collectively, these computational findings support the hypothesis that propranolol possesses the molecular characteristics of a viable therapeutic candidate for HCC, thereby substantiating the need for rigorous experimental and translational investigation to validate its clinical potential.
Insights
Propranolol shows potential for treating hepatocellular carcinoma (HCC). Computational analysis suggests it targets key cancer-driving proteins and pathways, warranting further clinical investigation.
Area of Science:
- Oncology
- Pharmacology
- Computational Biology
Background:
- Hepatocellular carcinoma (HCC) remains a significant health challenge, with existing treatments like tyrosine kinase inhibitors and immunotherapy showing limitations.
- Repurposing existing, safe medications is a promising strategy to develop new HCC therapies.
Purpose of the Study:
- To investigate the potential of propranolol as an anti-HCC agent using in-silico network pharmacology and molecular structure analysis.
- To identify key molecular targets and pathways affected by propranolol in HCC.
Main Methods:
- Utilized SwissTargetPrediction and GeneCards databases to identify 70 potential anti-HCC targets.
- Performed protein-protein interaction (PPI) analysis to construct a target network and identify hub proteins.
- Conducted Gene Ontology and KEGG enrichment analyses to understand affected pathways.
- Employed molecular docking and molecular dynamics simulations to assess propranolol's binding affinity and complex stability with key targets.
Main Results:
- Identified nine pivotal hub proteins (e.g., SRC, EGFR, JAK2, ERBB2, CDK2) central to HCC pathogenesis.
- Enrichment analyses revealed propranolol's potential to modulate critical oncogenic pathways (PI3K-Akt, MAPK) and immune checkpoints.
- Molecular docking showed strong binding of propranolol to key kinases like JAK2, ERBB2, EGFR, and CDK2.
- Molecular dynamics simulations confirmed stable interactions between propranolol and these targets over 100 ns.
Conclusions:
- Propranolol demonstrates potential to interact with core oncogenic kinases and modulate critical signaling pathways in HCC.
- These computational findings support propranolol as a viable therapeutic candidate for HCC.
- Further experimental and translational studies are necessary to validate propranolol's clinical efficacy in HCC treatment.
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