High-titer de novo raspberry ketone production in Yarrowia lipolytica via precursor supply engineering and fed-batch...

Raspberry ketone (RK) is a high-value aroma compound, yet de novo microbial production is constrained by an imbalanced supply of l-tyrosine and malonyl-CoA. Here, Yarrowia lipolytica was engineered for high-titer RK biosynthesis from glucose. A multi-copy RK pathway was integrated into the 26S rDNA locus. Deregulating and strengthening the shikimate pathway increased l-tyrosine formation, while reinforcing the pentose phosphate pathway and improving the conversion of L-tyrosine to p-coumaric acid (PCA) enhanced the supply of erythrose 4-phosphate, NADPH, and PCA, thereby alleviating l-tyrosine accumulation. To relieve malonyl-CoA limitation, we strengthened β-oxidation, introduced a non-carboxylative malonyl-CoA route, and reduced neutral lipid storage, improving RK production by 1.49-fold. In a 5-L fed-batch process optimized for carbon feeding, initial medium, and nitrogen supplementation, RK reached 7.24 g/L, representing a 42.5-fold improvement over the initial shake-flask strain and, based on published studies to date, the highest reported de novo RK titer in microbial fermentation.