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Updated: Feb 19, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Clinical burden, genetic heterogeneity, and diagnostic implications in primary hyperoxaluria type 2
Seema Hashmi1, Sabeeta Khatri2, Habib Qaiser2
1Department of Pediatric Nephrology, Sindh Institute of Urology and Transplantation, Karachi, Pakistan. seemahashmi2001@gmail.com.
Primary hyperoxaluria type 2 (PH2) in Pakistani children shows a high burden of advanced kidney disease at diagnosis. Diverse GRHPR gene mutations were identified, with male sex and high creatinine predicting disease progression.
Area of Science:
- Nephrology
- Genetics
- Pediatrics
Background:
- Primary hyperoxaluria type 2 (PH2) is a rare genetic disorder affecting oxalate metabolism due to glyoxalate reductase/hydroxypyruvate reductase (GRHPR) enzyme defects.
- This study focuses on characterizing the clinical presentation and outcomes of pediatric PH2 patients in Pakistan.
Purpose of the Study:
- To describe the demographic, clinical, and genetic characteristics of pediatric PH2 patients.
- To evaluate disease progression and identify predictors of advanced chronic kidney disease (CKD) in this cohort.
Main Methods:
- Retrospective analysis of 52 pediatric patients diagnosed with PH2 at a single center in Pakistan (2010-2022).
- Data included clinical features, laboratory findings, imaging, family history, and genetic testing (NGS, Sanger sequencing) for GRHPR mutations.
- Patients were followed for 24 months to monitor CKD progression.
Main Results:
- Fifty-two pediatric patients with PH2 were identified, predominantly males (56%) from the Sindh province (62%).
- Seventeen distinct GRHPR mutations were found, including six novel variants; Gly165Asp was the most common.
- At diagnosis, 30% of patients had CKD stage 5, increasing to 42% at 24 months; male sex and higher baseline creatinine predicted progression.
Conclusions:
- This is the first reported PH2 cohort from Pakistan, revealing a substantial disease burden.
- Diverse GRHPR mutations contribute to PH2, with a significant proportion of patients presenting with advanced CKD stage 5.
- Early identification and monitoring are crucial for managing PH2 progression in pediatric patients.
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