Dual roles of USP39 in stabilizing PB2 and orchestrating ribonucleoprotein assembly drive H5 influenza virus

Hui Yang1, Yurui Dong2, Ying Bian2

  • 1College of Veterinary Medicine, Yangzhou University, Yangzhou, Jiangsu 225009, China; Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou, Jiangsu 225009, China; Jiangsu Key Laboratory of Zoonosis, Yangzhou University, Yangzhou, Jiangsu 225009, China; Joint International Research Laboratory of Agriculture and Agri-Product Safety, the Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu 225009, China; Jiangsu Research Centre of Engineering and Technology for Prevention and Control of Poultry Disease, Yangzhou, Jiangsu 225009, China; Jiangsu Interdisciplinary Center for Zoonoses and Biosafety, Yangzhou University, Yangzhou 225009, China.

Cell Reports
|February 19, 2026
PubMed

Insights

Avian influenza virus (AIV) evades host defenses by hijacking USP39, a protein that prevents viral polymerase degradation and aids replication. This discovery offers a new target for developing antivirals against H5 AIV.

Area of Science:

  • Virology
  • Molecular Biology
  • Immunology

Background:

  • Host cells target avian influenza virus (AIV) polymerase PB2 for degradation as an antiviral defense.
  • The viral mechanisms to counteract PB2 degradation and sustain replication were previously unclear.

Purpose of the Study:

  • To identify host proteins interacting with H5 AIV PB2.
  • To elucidate the role of USP39 in AIV replication and host immune evasion.

Main Methods:

  • Co-immunoprecipitation to identify host proteins interacting with H5 AIV PB2.
  • Biochemical assays to assess USP39's deubiquitinase activity and its effect on PB2.
  • In vitro viral replication assays and in vivo pathogenicity studies in mice.

Main Results:

  • USP39 was identified as a deubiquitinase that directly deubiquitinates H5 AIV PB2 at K660, preventing its degradation.
  • USP39 also promotes PB2-PB1 association, independent of its enzymatic activity, facilitating ribonucleoprotein (RNP) complex formation.
  • A PB2 K660R substitution mutant enhanced viral replication and mouse pathogenicity.

Conclusions:

  • AIV hijacks USP39 to counteract host ubiquitination, sustain polymerase activity, and facilitate RNP biogenesis.
  • USP39 plays a dual role in amplifying viral RNA synthesis and dampening host antiviral responses.
  • USP39 represents a potential therapeutic target for developing broad-spectrum antivirals against pandemic-prone H5 viruses.

Related Concept Videos

Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Influenza01:27

Influenza

Influenza is an acute, highly communicable viral disease that affects the respiratory tract and is responsible for seasonal epidemics worldwide. Influenza A is the most prevalent type associated with widespread outbreaks and is subtyped based on two surface glycoproteins: hemagglutinin (H) and neuraminidase (N), as in H1N1. These glycoproteins are essential for viral infectivity, transmission, and immune recognition. Transmission occurs primarily through respiratory droplets and contaminated...