Jove
Visualize
Contact Us

Related Concept Videos

Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
Epistasis Analysis01:09

Epistasis Analysis

Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
Evolutionary Processes in Microbes01:26

Evolutionary Processes in Microbes

Microbial evolution occurs rapidly due to short generation times and a variety of genetic processes, including horizontal gene transfer, mutation, recombination, and genetic drift. These mechanisms collectively enable microbes to adapt swiftly to changing environments.Horizontal gene transfer (HGT) allows genes to move between different species and occurs through three main mechanisms: conjugation, transformation, and transduction. Conjugation involves direct cell-to-cell contact for DNA...
Evolution of New Traits in Microbes01:24

Evolution of New Traits in Microbes

Microorganisms evolve rapidly due to their large population sizes and short generation times, often exhibiting measurable changes within days under laboratory conditions. Natural selection acts on standing genetic variation, enabling the retention and amplification of beneficial traits that confer fitness advantages in changing environments.Adaptive Pigment Regulation in RhodobacterIn Rhodobacter, a genus of purple non-sulfur bacteria, light-harvesting pigments such as bacteriochlorophyll and...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Efficient generation of epitope-targeted antibodies with Germinal.

Nature biotechnology·2026
Same author

A combinatorial domain screening platform reveals epigenetic effector interactions for transcriptional perturbation.

Nature communications·2026
Same author

Genome modelling and design across all domains of life with Evo 2.

Nature·2026
Same author

Rewriting endogenous human transcripts with dual CRISPR-guided 3' trans-splicing.

Cell systems·2026
Same author

Semantic design of functional de novo genes from a genomic language model.

Nature·2025
Same author

Site-specific DNA insertion into the human genome with engineered recombinases.

Nature biotechnology·2025
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Jun 20, 2026

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
09:01

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

Published on: March 16, 2011

Rapid directed evolution guided by protein language models and epistatic interactions.

Vincent Q Tran1,2, Matthew Nemeth1, Liam J Bartie1

  • 1Arc Institute, Palo Alto, CA, USA.

Science (New York, N.Y.)
|February 19, 2026
PubMed
Summary

We developed MULTI-evolve, a rapid protein engineering framework to efficiently discover synergistic mutations. This machine learning-guided approach accelerates the discovery of improved protein functions.

More Related Videos

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
10:50

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening

Published on: April 1, 2016

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution
05:08

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution

Published on: January 12, 2024

Related Experiment Videos

Last Updated: Jun 20, 2026

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
09:01

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

Published on: March 16, 2011

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
10:50

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening

Published on: April 1, 2016

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution
05:08

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution

Published on: January 12, 2024

Area of Science:

  • Biochemistry and Molecular Biology
  • Computational Biology
  • Protein Engineering

Background:

  • Protein engineering faces challenges in navigating vast sequence spaces for synergistic mutations.
  • Current methods like stepwise mutation stacking and machine learning are often inefficient or resource-intensive.

Purpose of the Study:

  • To introduce MULTI-evolve, a novel framework for systematic engineering of protein multimutants.
  • To overcome limitations in gene synthesis and accelerate the discovery of beneficial mutations.

Main Methods:

  • Utilizing protein language models or functional data combined with epistatic modeling to predict synergistic mutation combinations.
  • Employing MULTI-assembly, a high-efficiency mutagenesis technique for assembling multikilobase sequences.

Main Results:

  • Achieved up to 10-fold protein improvements in a single round of directed evolution across three different proteins.
  • Demonstrated the framework's ability to streamline end-to-end multimutant engineering.

Conclusions:

  • MULTI-evolve offers a rapid and efficient solution for designing proteins with enhanced functions.
  • The framework is applicable to a broad range of protein types and functionalities.