mTOR-driven autophagy suppression defines metabolic vulnerability in CDK4/6 inhibitor-resistant HR+/HER2- breast
Luise von Wichert1,2, Alina Stroh1,2, Marie Witt1,2
1Institute of Molecular Oncology, Universities of Gießen and Marburg Lung Center (UGMLC), Member of the German Center for Lung Research (DZL), Philipps-University, Marburg, Germany.
Abstract:
Breast cancer (BC) is the most prevalent malignancy in women, with hormone receptor-positive, HER2-negative (HR+/HER2-) tumors representing ~70% of cases. While CDK4/6 inhibitors (CDK4/6i) combined with endocrine therapy have transformed treatment for metastatic HR+/HER2- BC, acquired resistance remains a major obstacle. Using HR+/HER2- BC models with acquired resistance to the CDK4/6 inhibitors Palbociclib or Ribociclib, we uncovered a metabolic vulnerability in highly resistant clones, mediated by mTORC1 hyperactivation and autophagy suppression. Gene expression profiling revealed enrichment of glycolysis and mTORC1 pathways in CDK4/6i-resistant cells, which manifested as heightened sensitivity to the metabolic inhibitors Metformin and Dichloroacetate (DCA). Mechanistically, mTORC1 overactivation impaired autophagy via ULK1-Ser757 phosphorylation, as confirmed by LC3 flux assays, leaving resistant cells unable to adapt to energy stress. Treatment with metabolic drugs triggered AMPK activation, ACC inhibition, and PARP cleavage, culminating in apoptosis. Clinically, immunohistochemical analysis of a BC cohort revealed a significant correlation between mTORC1 activity (p4E-BP1T37/46) and autophagy suppression (p62 accumulation), supporting the translational relevance of this axis. Our findings propose mTORC1-mediated autophagy defects as a biomarker for metabolic vulnerability in CDK4/6i-resistant BC, offering a rationale for targeting these tumors with metabolic therapies to overcome resistance.
Insights
Acquired resistance to CDK4/6 inhibitors in breast cancer (BC) involves mTORC1 hyperactivation and suppressed autophagy. Targeting this metabolic vulnerability with drugs like Metformin offers a new strategy for treating resistant HR+/HER2- BC.
Area of Science:
- Oncology
- Molecular Biology
- Metabolic Pathways
Background:
- Hormone receptor-positive, HER2-negative (HR+/HER2-) breast cancer (BC) is common.
- CDK4/6 inhibitors (CDK4/6i) plus endocrine therapy improve outcomes but acquired resistance is a challenge.
Purpose of the Study:
- Investigate the mechanisms of acquired resistance to CDK4/6i in HR+/HER2- BC.
- Identify metabolic vulnerabilities in resistant BC cells.
- Explore potential therapeutic strategies targeting these vulnerabilities.
Main Methods:
- Utilized HR+/HER2- BC models with acquired resistance to Palbociclib or Ribociclib.
- Performed gene expression profiling and metabolic assays.
- Conducted mechanistic studies involving mTORC1, autophagy, and AMPK pathways.
- Analyzed clinical BC samples using immunohistochemistry.
Main Results:
- Resistant BC clones exhibited mTORC1 hyperactivation and suppressed autophagy.
- Gene expression showed enrichment of glycolysis and mTORC1 pathways.
- Resistant cells were sensitive to metabolic inhibitors Metformin and Dichloroacetate (DCA).
- mTORC1 overactivation impaired autophagy via ULK1-Ser757 phosphorylation.
- Metabolic drug treatment induced apoptosis in resistant cells.
- Clinical samples showed a correlation between high mTORC1 activity and suppressed autophagy.
Conclusions:
- mTORC1-mediated autophagy defects are a key feature of CDK4/6i-resistant BC.
- This metabolic vulnerability can be targeted with drugs like Metformin and DCA.
- mTORC1-mediated autophagy suppression may serve as a biomarker for metabolic vulnerability in resistant BC.
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