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Isolation of Murine Peritoneal Macrophages to Carry Out Gene Expression Analysis Upon Toll-like Receptors Stimulation
Published on: April 29, 2015
Export of miRNAs from activated macrophages is cooperative and HuR-dependent
Syamantak Ghosh1, Kamalika Mukherjee2, Suvendra N Bhattacharyya3
1RNA Biology Research Laboratory, Molecular Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, 700032, India.
Abstract:
MiRNA export is a tightly regulated process crucial for maintaining balanced miRNA and target gene expression levels in metazoan cells. RNA-interacting proteins such as HuR play a key role in the selectivity and specificity of miRNA export, thereby enabling context-dependent release of gene-repressing miRNAs from mammalian cells. Our results demonstrate that activated macrophages cooperatively export miRNAs, where hepatic miR-122 significantly enhances the export of miR-146a and other miRNAs. We also observe that this cooperative export causes a synchronized increase in the expression of pro-inflammatory target genes in activated macrophages. In investigating the molecular mechanisms, we found that the miRNA-binding protein HuR cooperatively binds to miRNAs and promotes their entry into endosomes, thereby facilitating their cooperative export. This highlights the selective and cooperative nature of endosome targeting happening in activated macrophages as a prerequisite for extracellular vesicle-mediated miRNA export. Impact statement This study uncovers a new mechanism for miRNA export regulation in mammalian cells, driven by the RNA-binding protein HuR. In macrophages, HuR cooperatively binds with miRNAs to export both low- and high-affinity substrates, thereby influencing macrophage activation. This cooperative export method is a common strategy for coordinated miRNA release across different cells.
Insights
RNA-binding protein HuR drives cooperative microRNA (miRNA) export in activated macrophages. This mechanism influences macrophage activation and coordinated miRNA release, impacting gene expression.
Area of Science:
- Molecular Biology
- Cell Biology
- Immunology
Background:
- MicroRNA (miRNA) export is vital for gene expression regulation in metazoans.
- RNA-binding proteins, like HuR, control miRNA export selectivity and specificity.
- Dysregulated miRNA export impacts cellular function and disease states.
Purpose of the Study:
- To investigate the role of RNA-binding protein HuR in miRNA export mechanisms within activated macrophages.
- To elucidate the cooperative nature of miRNA export and its impact on target gene expression.
- To understand the molecular pathways governing selective endosome targeting for miRNA export.
Main Methods:
- Co-immunoprecipitation assays to study protein-miRNA interactions.
- Quantitative real-time PCR (qRT-PCR) to measure miRNA and target gene expression.
- Confocal microscopy to visualize miRNA localization and endosome trafficking.
- Western blotting to assess protein expression levels.
Main Results:
- Activated macrophages exhibit cooperative miRNA export, with miR-122 enhancing miR-146a export.
- Cooperative export leads to a synchronized increase in pro-inflammatory target gene expression.
- HuR protein binds cooperatively to miRNAs, promoting their endosomal entry and subsequent export.
- This process highlights selective, cooperative endosome targeting in activated macrophages.
Conclusions:
- HuR-mediated cooperative miRNA export is a novel regulatory mechanism in mammalian cells.
- This mechanism influences macrophage activation by coordinating the release of specific miRNAs.
- Cooperative miRNA export represents a conserved strategy for intercellular communication via extracellular vesicles.
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