Related Experiment Video
Updated: Feb 24, 2026

10:43
Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology
Published on: November 5, 2014
26.4K
Ribonucleotide reductases recapitulate biogeographic patterns within virioplankton according to ocean biogeochemistry
Amelia O Harrison1,2, Ryan M Moore1,2, Barbra D Ferrell3,2
1Center for Bioinformatics and Computational Biology, Dept. Computer & Information Sciences, Univ. of Delaware, Newark, DE.
Biorxiv : the Preprint Server for Biology
|February 23, 2026
Summary
Marine viruses play a key role in nutrient cycling. This study reveals that many viruses encode ribonucleotide reductase (RNR) enzymes, influencing DNA synthesis and viral populations globally.
Area of Science:
- Marine microbiology
- Viral ecology
- Biogeochemistry
Background:
- Lytic marine viruses are crucial for nutrient cycling and host control.
- Viral genome replication is vital for viral fitness.
- Deoxyribonucleotides (dNTPs) are essential for DNA synthesis, with ribonucleotide reductase (RNR) being the key enzyme.
Purpose of the Study:
- To investigate the distribution and diversity of RNR-encoding virioplankton in the global ocean.
- To understand the functional implications of viral RNR genes in marine ecosystems.
Main Methods:
- Metagenomic analysis of virioplankton communities.
- Phylogenetic analysis of RNR genes.
- Correlation of RNR distribution with environmental factors.
Main Results:
- RNR-encoding virioplankton are globally distributed, mirroring total virioplankton patterns.
- Class II monomeric RNR (NrdJm) was the most common type (∼66%), utilizing triphosphate ribonucleotides.
- Class I RNR distribution correlated with iron and manganese co-factor availability.
- High diversity of viral RNRs was observed, including novel phylogenetic clades.
- RNR-encoding viral populations (∼10% of total) showed fidelity with oceanic biogeographical features.
Conclusions:
- Viral RNRs are significant components of marine ecosystems, impacting dNTP pools.
- The NrdJm enzyme's prevalence suggests a specific role in viral replication strategies.
- Viral RNR diversity highlights their evolutionary adaptation and ecological importance.
More Related Videos
Related Concept Videos
Retroviruses
15.1K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
15.1K
Bacterial RNA Polymerase
33.0K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
33.0K
Viruses of Archaea
559
Archaeal viruses play a crucial role in the ecosystems of extremophilic archaea, particularly those belonging to the phyla Euryarchaeota and Crenarchaeota. By shaping host evolution and facilitating gene transfer, these viruses influence microbial communities and contribute to genetic diversity in extreme environments. The archaea they infect thrive in acidic hot springs and hydrothermal vents characterized by high temperatures and low pH. Archaeal viruses exhibit remarkable structural...
559
Bacterial Transcription
37.1K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
37.1K
Retrovirus Life Cycles
49.9K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
49.9K
Ribozymes
13.5K
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can...
Ribozymes can...
13.5K

