Related Experiment Video
Updated: Feb 24, 2026

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
Published on: May 27, 2020
Benchmarking of vibrational exciton models against quantum-chemical localized-mode calculations
Anna M van Bodegraven1, Kevin Focke1, Mario Wolter1
1Technische Universität Braunschweig, Institute of Physical and Theoretical Chemistry, Gaußstraße 17, 38106 Braunschweig, Germany.
Abstract:
Vibrational exciton models are widely used for the simulation of biomolecular vibrational spectra, particularly two-dimensional infrared spectra. The parameters entering such models, specifically harmonic local-mode frequencies and harmonic coupling constants, are provided by vibrational maps, which have been parameterized against computational data for small molecules as well as experimental data. Here, we put forward a novel approach for assessing the quality of these harmonic vibrational maps against quantum-chemical reference data. For a test set consisting of molecular dynamics snapshots of polypeptides and small proteins, covering different secondary structure motifs, we performed full quantum-chemical calculations of harmonic vibrational frequencies and normal modes and applied a localization of normal modes to obtain localized-mode frequencies and coupling constants. These can be directly compared to those predicted by vibrational maps. We find that while there is a good correlation for the coupling constants and for local-mode frequencies of isolated polypeptides, there is hardly any correlation for the local-mode frequencies of solvated polypeptides. This striking finding calls into question the accuracy of the electrostatic maps that are used to model the effect of the solvent molecules on local-mode frequencies.
More Related Videos
08:54Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
Published on: January 25, 2020
12:11Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Related Concept Videos
IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration
According to Hooke's law, the vibrational frequency is directly proportional to...
UV–Vis Spectroscopy: Molecular Electronic Transitions
The Quantum-Mechanical Model of an Atom
Molecular Orbital Theory I
Molecular Orbital Theory II
Molecular Spectroscopy: Absorption and Emission