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Published on: April 19, 2024
Bacterial co-detection is associated with higher multidrug-resistant Pseudomonas aeruginosa risk: insights from the
Boshun Zhang1, Xiaoli Wang2, Xiaoling Qi1
1Department of Geriatrics, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Background:
Pseudomonas aeruginosa (PA) poses a significant clinical challenge due to its high antibiotic resistance. While microbial communities aid in spreading antibiotic resistance genes (ARGs), their role in the emergence of multidrug-resistant Pseudomonas aeruginosa (MDR-PA) is unclear. This study examines the impact of bacterial interactions on MDR-PA prevalence and underlying mechanisms.
Methods:
This retrospective cohort study analysed 2965 PA-positive culture patients from the Medical Information Mart for Intensive Care IV (MIMIC-IV version 3.1) database, stratified by bacterial co-detection with PA. Propensity score matching (PSM) and logistic regression were used. Metagenomic sequencing was performed on deep endotracheal secretions from 19 PA ventilator-associated pneumonia (VAP) patients, constructing an ARGs dissemination network within the lower respiratory tract (LRT) microbiota. Comparative analysis of LRT microbiota and ARGs profiles was conducted between PA-VAP survivors and non-survivors.
Results:
Patients with bacterial co-detection with PA had a significantly higher MDR-PA prevalence and mortality than those with PA-only detection. Logistic regression identified bacterial co-detection as an independent risk factor for MDR-PA (adjusted OR 2.14; 95% CI 1.64-2.83, P < 0.001) and subsequent mortality (adjusted OR 1.67; 95% CI 1.30-2.14, P < 0.001). Metagenomic analysis of 19 PA-VAP cases suggested that horizontal gene transfer (HGT) may facilitate inter-species dissemination of ARGs (e.g. eptB, smeE, ANT(4')-Ia) between PA and other co-colonizing LRT microbiota. Distinct ARG profiles were observed between PA-VAP survivors and non-survivors.
Conclusion:
Our findings indicate that bacterial co-detection with PA elevates the risk of MDR-PA and worsens clinical outcomes, potentially driven by HGT-mediated ARG exchange within the host microbiota.
Insights
Bacterial co-infections increase the risk of multidrug-resistant Pseudomonas aeruginosa (MDR-PA) and mortality. Horizontal gene transfer likely drives antibiotic resistance gene spread within the host microbiota, impacting patient outcomes.
Area of Science:
- Microbiology
- Clinical Medicine
- Genetics
Background:
- Pseudomonas aeruginosa (PA) is a major cause of antibiotic resistance.
- The role of microbial communities in the emergence of multidrug-resistant PA (MDR-PA) is not fully understood.
- This study investigates bacterial interactions and their impact on MDR-PA.
Purpose of the Study:
- To determine the impact of bacterial co-detection on MDR-PA prevalence.
- To elucidate the mechanisms underlying MDR-PA emergence in polymicrobial infections.
- To assess the association between bacterial co-detection and patient mortality.
Main Methods:
- Retrospective cohort study of 2965 PA-positive patients from the MIMIC-IV database.
- Propensity score matching and logistic regression to analyze risk factors.
- Metagenomic sequencing of 19 ventilator-associated pneumonia (VAP) patient samples to construct ARG dissemination networks.
Main Results:
- Bacterial co-detection with PA significantly increased MDR-PA prevalence and mortality.
- Co-detection was an independent risk factor for MDR-PA (aOR 2.14) and mortality (aOR 1.67).
- Metagenomic data suggested horizontal gene transfer (HGT) facilitates ARG dissemination between PA and other bacteria in the lower respiratory tract (LRT).
Conclusions:
- Bacterial co-detection with PA is linked to increased MDR-PA risk and poorer clinical outcomes.
- HGT-mediated ARG exchange within the host microbiota is a potential driver of these outcomes.
- Understanding these interactions is crucial for managing MDR-PA infections.
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