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Identification of Novel CK2 Kinase Substrates Using a Versatile Biochemical Approach
Published on: February 21, 2019
Phosphoproteomic Analysis of Cortical Tissue from Mice Lacking Both CaMKIIα and CaMKIIβ Identifies Novel In Vivo
Pomme M F Rigter1,2, Karel Bezstarosti3, Oguz Can Koc4
1Department of Clinical Genetics, Erasmus MC, 3015 GD Rotterdam, The Netherlands.
Abstract:
Ca2+/calmodulin-dependent protein kinase II (CaMKII) plays a critical role in calcium signaling. Several studies have shown that mice with single Camk2a or Camk2b gene knockouts are viable, yet exhibit distinct phenotypes, whereas the double knockout of both genes is lethal. These findings indicate that each gene can have distinct roles and that they also partially compensate for each other in yet unknown essential brain functions. In order to provide insight into potential novel CaMKII functions, we performed parallel phosphoproteomic analyses on nonstimulated cortex tissues from inducible Camk2a and Camk2b double knockout (Camk2af/f;Camk2bf/f;CAG-CreESR) mice and from wild type mice. A total of 5622 phosphorylated peptides derived from 2080 proteins were identified. Phosphorylation at serine/threonine residues in 130 proteins was downregulated in the double knockout mice, including residues in 113 proteins that have not previously been identified as potential CaMKII substrates. Comparison of amino acid sequences surrounding the downregulated phosphorylation residues provided new insights into the CaMKII-substrate consensus sequences in vivo. This data set provides an important resource for future studies examining novel roles for CaMKII in the brain.
Insights
Calcium/calmodulin-dependent protein kinase II (CaMKII) is crucial for brain function. This study identified novel CaMKII substrates and phosphorylation sites, revealing new insights into its essential roles in the brain.
Area of Science:
- Neuroscience
- Molecular Biology
- Biochemistry
Background:
- Calcium/calmodulin-dependent protein kinase II (CaMKII) is vital for calcium signaling.
- Distinct and overlapping roles of CaMKII isoforms (CaMKIIa and CaMKIIb) are suggested by gene knockout studies.
Purpose of the Study:
- To investigate novel CaMKII functions by identifying its substrates.
- To gain insights into CaMKII-substrate consensus sequences in vivo.
Main Methods:
- Parallel phosphoproteomic analysis of inducible CaMKIIa/b double knockout and wild-type mouse cortex.
- Identification and quantification of phosphorylated peptides and proteins.
Main Results:
- 5622 phosphorylated peptides from 2080 proteins were identified.
- Phosphorylation of 130 proteins was downregulated in CaMKII double knockout mice.
- 113 novel potential CaMKII substrates were identified.
Conclusions:
- This study provides a comprehensive dataset of CaMKII substrates.
- The findings offer new insights into CaMKII-substrate recognition and its essential brain functions.
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