Genotype-phenotype heterogeneity among patients with lipodystrophy harboring rare POLD1 variants

Fieke W Hoff1, Chao Xing2,3,4, Chun-Yuan Huang2

  • 1Hematology Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.

Abstract

Insights

Patients with the POLD1 p.Ser605del variant show a more severe form of Mandibular hypoplasia, deafness, progeroid features and lipodystrophy (MDPL) syndrome compared to those with other POLD1 missense variants.

Area of Science:

  • Genetics
  • Human Physiology
  • Rare Diseases

Background:

  • Mandibular hypoplasia, deafness, progeroid features and lipodystrophy (MDPL) syndrome is a rare autosomal dominant disorder.
  • Pathogenic heterozygous variants in POLD1 cause MDPL syndrome.
  • Existing literature lacks genotype-phenotype associations for MDPL.

Purpose of the Study:

  • To identify and characterize POLD1 variants in 14 new patients with lipodystrophy.
  • To compare the clinical and metabolic phenotypes between patients with POLD1 p.Ser605del and missense variants.

Main Methods:

  • Genetic sequencing (exome, genome, candidate gene) was performed on 14 patients.
  • Phenotypic data were collected and compared between variant groups.
  • Statistical analyses included Fisher's exact test and Student's t-test.

Main Results:

  • Nine different POLD1 variants were identified, including three novel ones.
  • Patients with the p.Ser605del variant exhibited significantly higher rates of mandibular hypoplasia, small mouth, crowded teeth, and male hypogonadism.
  • No significant differences in metabolic complications like diabetes or hepatic steatosis were observed between groups.

Conclusions:

  • The POLD1 p.Ser605del variant is associated with a more severe, typical MDPL phenotype.
  • Missense POLD1 variants are linked to atypical MDPL presentations.
  • This study establishes a genotype-phenotype correlation for POLD1-related disorders.

Related Concept Videos

Pleiotropy01:33

Pleiotropy

Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
43.6K
Pharmacogenetics of Drug Transporters: P-Glycoprotein and Solute Carrier Transporters01:16

Pharmacogenetics of Drug Transporters: P-Glycoprotein and Solute Carrier Transporters

The pharmacogenetics of drug transporters is increasingly recognized as a critical factor influencing interindividual variability in drug absorption, distribution, and elimination. These membrane-bound proteins regulate drugs' movement across cellular barriers by actively pumping them out (efflux) or facilitating their uptake (influx). Among the major transporter families, ATP-binding cassette (ABC) and solute carrier (SLC) transporters play particularly prominent roles. Genetic polymorphisms...
77
Pharmacogenomics: Identification of New Drug Targets01:29

Pharmacogenomics: Identification of New Drug Targets

Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
53
Principles of Pharmacogenetics: Types of Genetic Variants01:27

Principles of Pharmacogenetics: Types of Genetic Variants

The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
59
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu01:29

Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu

Genetic variations significantly influence drug response through pharmacokinetics, receptor interactions, and biologic milieu modifications. Pharmacokinetic alterations impact drug metabolism and clearance, affecting efficacy and toxicity. Variants in drug-metabolizing enzymes, such as CYP2C9 and CYP2C19, alter drug activation and elimination. For example, CYP2C9 loss-of-function variants require lower warfarin doses to prevent excessive bleeding, while CYP2C19 variants reduce clopidogrel...
63
Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes01:28

Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes

Cytochrome P450 (CYP450) enzymes are a superfamily of heme-containing monooxygenases that play a pivotal role in Phase I drug metabolism by catalyzing oxidation and reduction reactions.These enzymes transform lipophilic xenobiotics into more hydrophilic metabolites, facilitating subsequent Phase II conjugation and eventual excretion. The CYP450 family is classified into families (e.g., CYP1–CYP3) and subfamilies (e.g., CYP2A, CYP2C), based on amino acid sequence homology.CYP450...
45