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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
Fructose-induced prediabetes causes persistent DNA methylation changes in white adipose tissue despite metabolic
Bárbara Dumrauf1, María Victoria Mencucci1, Ezequiel Lacunza2
1CENEXA. Centro de Endocrinología Experimental y Aplicada (UNLP-CONICET- CeAs CICPBA), Facultad de Ciencias Médicas UNLP., 60 y 120 (s/n), 1900, La Plata, Argentina.
Fructose-induced prediabetes causes DNA methylation changes in visceral white adipose tissue. Some epigenetic alterations persist even after metabolic recovery, suggesting a role in early type 2 diabetes development.
Area of Science:
- Metabolomics and Epigenetics
- Endocrinology and Metabolic Health
Background:
- White adipose tissue (WAT) is a crucial endocrine organ for metabolic regulation.
- Epigenetic mechanisms, particularly DNA methylation, are implicated in early metabolic dysfunction.
- The role of DNA methylation in prediabetes and its reversibility is not well understood.
Purpose of the Study:
- To investigate genome-wide DNA methylation patterns in visceral WAT of prediabetic rats.
- To assess the impact of dietary normalization on these methylation changes.
- To identify specific genes and pathways affected by DNA methylation alterations.
Main Methods:
- Induction of a prediabetic state in rats using a fructose-rich diet.
- Whole Genome Bisulfite Sequencing (WGBS) to identify differentially methylated CpG sites in visceral WAT.
- Analysis of gene expression using RT-qPCR and pathway enrichment analysis.
Main Results:
- Fructose consumption led to a prediabetic phenotype and significant DNA methylation changes in visceral WAT.
- 1,151 differentially methylated CpG sites were identified, with 330 genes enriched in oxidative phosphorylation and thermogenesis pathways.
- Despite successful metabolic normalization, a subset of methylation alterations persisted, affecting genes like Kdm4c, Ces1f, and Uxs1.
Conclusions:
- Fructose-induced prediabetes causes persistent DNA methylation changes in visceral WAT.
- These persistent epigenetic alterations may contribute to the early stages of metabolic disturbances leading to type 2 diabetes.
- Dietary interventions may not fully reverse all epigenetic changes associated with metabolic dysfunction.
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