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The SHAP Explainer Model for Binary Classifiers Detecting Functional Groups in Molecules Based on FTIR Spectra
Tomasz Urbańczyk1, Jakub Bożek2, Jarosław Koperski1
1Smoluchowski Institute of Physics, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Łojasiewicza 11, 30-348 Krakow, Poland.
Abstract:
One of the disadvantages of deep learning models is the difficulty in understanding the premises on the basis of which the models make decisions. This might hinder the applicability of the model due to legal issues. In this paper, we investigate the decision process of CNN-KAN model trained to recognize chemical groups based on recorded FTIR spectra. The CNN-KAN model was trained as a binary classifier and using SHAP values, we could trace back the decision-making process and point out which part of the FTIR spectra are responsible for each positive or negative decision. It appears that the decision-making process of the deep learned CNN-KAN model is based on spectral regions that according to the literature have a large impact on the detection of particular functional groups.
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Introduction to Functional Groups
Functional groups are group of atoms with specific chemical properties that occur within organic molecules and sometimes denoted as “R”. Functional groups are found along the carbon backbone of macromolecules can form chains or rings of carbon atoms. Functional groups can “functionalize” a compound by enabling it to adopt different physical and chemical properties.
Types of common functional groups
The table below summarizes some of the major functional groups in organic chemistry....
Molecular Shapes
Two regions of electron density in a diatomic...
IR Spectrum
Transmittance is defined as the ratio of the radiant power passing through a sample to that from the radiation's source. Multiplying the transmittance by 100 gives the percent transmittance (%T), which varies between 100% (no absorption) and 0%...
Molecular Models
Overview of Advanced Functional Groups
Functional groups are groups of atoms with specific chemical properties that occur within organic molecules and are sometimes denoted as “R”. Functional groups can “functionalize” a compound by enabling it to adopt different physical and chemical properties.
Types of Advanced Functional Groups
The table below summarizes some of the major functional groups in organic chemistry.