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Updated: Feb 28, 2026

Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays
Published on: October 23, 2019
Rational Design, Synthesis, and Molecular Docking of Novel Terpene Analogues of Imatinib, and Their Inhibition on
Rositsa Mihaylova1, Asine Dailova-Barzeva1, Irena Philipova2
1Department of Pharmacology, Pharmacotherapy and Toxicology, Faculty of Pharmacy, Medical University of Sofia, 1000 Sofia, Bulgaria.
Abstract:
Background/Objectives: Imatinib, the first tyrosine kinase inhibitor, marks the beginning of a revolution in clinical oncology. Disrupting oncogenic kinase-dependent signaling pathways represents a key strategy for advancing targeted cancer therapies. Terpene analogues of imatinib were developed to probe the influence of terminal ring modifications on BCR-ABL inhibition and downstream oncogenic signaling. Methods: Nine novel imatinib analogues bearing bulky aliphatic moieties were designed, synthesised, and structurally characterized by 1H/13C NMR spectroscopy and high-resolution mass spectrometry (HRMS). Molecular docking calculations were performed to assess the binding modes and intermolecular interactions. The cytotoxicity of the newly synthesized imatinib derivatives was evaluated across a panel of BCR-ABL+ leukemia cell lines. Results: Molecular docking analyses demonstrated conserved interactions within the ATP-binding site of BCR-ABL for all derivatives, with calculated docking scores ranging between 123 and 128, while modifications at the terminal ring introduced subtle changes in electrostatic and steric profiles. Biological evaluation using MTT-based cytotoxicity assays in BCR-ABL+ leukemic cell lines revealed enhanced antiproliferative activity compared with imatinib, with compounds 6a (flexible cyclohexyl) and 6d (rigid camphane-type (+)-isopinocampheyl) exhibiting the lowest micromolar activity in the AR-230 model (IC50 values of 1.1 and 1.2 μM, respectively). Proteome-wide phosphokinase profiling demonstrated shared suppression of STAT5/3/6, RSK1/2, S6K1/p70, and Pyk2, confirming effective disruption of canonical BCR-ABL pathways. Critically, the terpene moiety dictated downstream pathway bias: 6a preferentially attenuated CREB activation, whereas 6d more effectively suppressed the PI3K/Akt oncogenic axis and strongly activated proapoptotic p53-mediated stress responses. Conclusions: Our findings establish terpene-engineered imatinib analogues as tunable modulators and promising candidates for targeting downstream BCR-ABL signaling pathways in leukemia treatment.
Insights
Novel terpene-engineered imatinib analogues show enhanced antiproliferative activity against BCR-ABL+ leukemia. These compounds effectively disrupt oncogenic signaling pathways, offering promising new avenues for leukemia treatment.
Area of Science:
- Medicinal Chemistry
- Oncology
- Molecular Biology
Background:
- Imatinib revolutionized cancer therapy by targeting oncogenic kinases.
- Disrupting BCR-ABL signaling is key for targeted cancer treatments.
- Terpene analogues of imatinib were synthesized to explore terminal ring modifications.
Purpose of the Study:
- To design, synthesize, and characterize novel imatinib analogues.
- To evaluate the binding modes and interactions of these analogues.
- To assess the cytotoxicity and downstream signaling effects of the derivatives in BCR-ABL+ leukemia.
Main Methods:
- Synthesis and structural characterization of nine imatinib analogues using NMR and HRMS.
- Molecular docking to predict binding interactions within the BCR-ABL ATP-binding site.
- MTT-based cytotoxicity assays and proteome-wide phosphokinase profiling in leukemia cell lines.
Main Results:
- Docking analyses showed conserved BCR-ABL interactions with subtle steric/electrostatic changes.
- Novel analogues exhibited enhanced antiproliferative activity against BCR-ABL+ leukemia cells compared to imatinib.
- Compounds 6a and 6d showed potent activity (IC50 1.1-1.2 μM) and differential downstream pathway modulation (CREB vs. PI3K/Akt/p53).
Conclusions:
- Terpene-engineered imatinib analogues are effective BCR-ABL inhibitors.
- These derivatives demonstrate tunable modulation of downstream oncogenic signaling.
- The synthesized analogues represent promising candidates for novel leukemia therapies.
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