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An Analytical Tool that Quantifies Cellular Morphology Changes from Three-dimensional Fluorescence Images
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Three-dimensional fluorescence spectroscopy recognition and component analysis based on machine learning.

Zhuohang Wang1, Lanying Guo2, Zhe Li1

  • 1Beijing Key Laboratory of Work Safety Intelligent Monitoring, School of Electronic Engineering, Beijing University of Posts and Telecommunications, Beijing 100876, China.

Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy
|February 27, 2026
PubMed
Summary
This summary is machine-generated.

This study introduces a machine learning approach using 3D EEM fluorescence spectroscopy for accurate contamination detection and component analysis. The developed SE-UNet model effectively identifies impurities and analyzes complex mixtures, offering a practical solution for environmental monitoring.

Keywords:
Component analysisMachine learningPARAFACSample contaminationThree-dimensional excitation-emission matrix

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Area of Science:

  • Analytical Chemistry
  • Spectroscopy
  • Machine Learning

Background:

  • Three-dimensional excitation-emission matrix (3D EEM) fluorescence spectroscopy is valuable for identifying fluorescent substances.
  • Spectral contamination from impurities can compromise identification accuracy.
  • Developing robust methods for contamination detection and component analysis is crucial.

Purpose of the Study:

  • To present an integrated machine learning and 3D EEM spectroscopy approach for contamination detection and component analysis.
  • To evaluate the performance of various machine learning algorithms in identifying contaminants.
  • To develop an advanced deep learning model for analyzing complex fluorescent mixtures.

Main Methods:

  • Collected 3D EEM fluorescence spectral data in a simulated contaminated environment.
  • Assessed contaminant detection using K-Nearest Neighbors (KNN), Random Forest (RF), and Convolutional Neural Network (CNN).
  • Developed and trained a Shared Encoder U-Net (SE-UNet) model using PARAFAC-derived spectral profiles for component analysis.

Main Results:

  • All tested deep learning models showed comparable accuracy in simple binary-component scenarios.
  • The optimized SE-UNet demonstrated superior performance and generalization in complex mixtures compared to CNN and VGG architectures.
  • SE-UNet enabled rapid single-sample inference, outperforming the iterative Parallel Factor Analysis (PARAFAC) method.

Conclusions:

  • The integrated framework offers a practical and scalable solution for contamination analysis.
  • The SE-UNet model provides a robust tool for identifying fluorescent impurities and analyzing complex mixtures.
  • This approach enhances the reliability of 3D EEM spectroscopy in laboratory and environmental monitoring.