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Updated: Mar 1, 2026

Drug Repurposing Hypothesis Generation Using the "RE:fine Drugs" System
Published on: December 11, 2016
Exploring the shared gene signatures between rheumatoid arthritis and type 2 diabetes and their implication for drug
Xiaochao Qu1, Xuemei Zuo1, Hong Du1
1Laboratory of Molecular and Statistical Genetics and Hunan Provincial Key Laboratory of Animal Intestinal Function and Regulation, College of Life Sciences, Hunan Normal University, Changsha, China.
Abstract:
Numerous studies have demonstrated a pathogenic association between rheumatoid arthritis (RA) and type 2 diabetes mellitus (T2DM), 2 chronic inflammatory diseases. This study integrates transcriptomic and bioinformatic analyses to elucidate the shared molecular mechanisms underlying RA-associated T2DM, aiming to identify effective therapeutic strategies. RNA expression profile datasets for RA and T2DM were downloaded from the gene. Expression Omnibus and Gene Network (Grein) databases. Common differentially expressed genes shared between RA and T2DM were identified and subsequently subjected to gene enrichment analysis, protein-protein interaction network construction, GeneMANIA analysis, immune microenvironment evaluation, and drug prediction. Additionally, the diagnostic performance of hub genes was assessed using receiver operating characteristic curve analysis. Finally, molecular docking was employed to facilitate computer-aided drug design and to investigate drug-gene interactions. We identified 352 common differentially expressed genes, and functional analyses showed that they were mainly involved in the immune regulation of RA-associated T2DM. Thirteen key genes were confirmed through the protein-protein interaction network analysis and validation cohort. Receiver operating characteristic curves confirmed the reliability of their diagnostic value. GeneMANIA analyses suggested these genes were mainly associated with leukocytes, particularly neutrophils. Results from the immune microenvironment revealed abnormal levels of neutrophils in RA and T2DM. Among them, 10 key genes (LYN, TLR1, TLR2, TLR8, FCGR1A, FCGR2A, CCR1, CXCL1, FPR1, and SELL) were considered as neutrophil-related genes. Mechanistically, these genes activate pro-inflammatory signaling pathways, exacerbating tissue inflammation and promoting insulin resistance, ultimately leading to the onset of T2DM, neutrophils play a pivotal role in this process. Drug prediction and molecular docking results indicated that PD-169316 is a potential immunotherapeutic for patients with RA in combination with T2DM. This study concludes that neutrophil-driven inflammatory responses and their associated genes may accelerate the progression of type 2 diabetes caused by RA.
Insights
Rheumatoid arthritis (RA) and type 2 diabetes mellitus (T2DM) share inflammatory pathways driven by neutrophils. Targeting neutrophil-related genes may offer new therapies for RA-associated T2DM.
Area of Science:
- Immunology
- Genomics
- Computational Biology
Background:
- Rheumatoid arthritis (RA) and type 2 diabetes mellitus (T2DM) are chronic inflammatory diseases with established pathogenic links.
- Shared molecular mechanisms driving RA-associated T2DM remain incompletely understood, hindering effective therapeutic development.
Purpose of the Study:
- To elucidate shared molecular mechanisms between RA and T2DM using transcriptomic and bioinformatic analyses.
- To identify potential therapeutic targets and diagnostic biomarkers for RA-associated T2DM.
Main Methods:
- Downloaded and analyzed RNA expression profile datasets for RA and T2DM.
- Identified common differentially expressed genes, constructed protein-protein interaction networks, and performed gene enrichment and immune microenvironment analyses.
- Utilized receiver operating characteristic curve analysis for diagnostic assessment and molecular docking for drug-gene interaction prediction.
Main Results:
- Identified 352 common differentially expressed genes primarily involved in immune regulation.
- Confirmed 13 key genes, with 10 identified as neutrophil-related, implicating neutrophils in RA-T2DM pathogenesis.
- Discovered that neutrophil-driven inflammation and associated genes exacerbate insulin resistance, potentially driving T2DM onset in RA patients.
Conclusions:
- Neutrophil-driven inflammatory responses and associated genes significantly contribute to the progression of T2DM in RA patients.
- Identified specific neutrophil-related genes and pathways as potential therapeutic targets.
- PD-169316 emerged as a potential immunotherapeutic agent for combined RA and T2DM treatment.
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