Gut microbiota immaturity with DL-endopeptidase deficiency links antibiotic use to preterm late-onset sepsis

Wei Shen1, Huidi Wang2, Jiaxuan Wang2

  • 1Department of Pediatrics, Nanfang Hospital, Southern Medical University, Guangzhou, China; Microbiome Medicine Center, Department of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, China; Department of Neonatology, Shenzhen Hospital, Southern Medical University, Shenzhen, China.

Cell Host & Microbe
|February 28, 2026
PubMed

Insights

Early antibiotic exposure in preterm infants elevates sepsis risk by disrupting gut microbiota development. Restoring bacterial DL-endopeptidase activity may mitigate this risk and protect infants.

Area of Science:

  • Microbiology
  • Neonatal Medicine
  • Immunology

Background:

  • Early antibiotic exposure is a significant risk factor for late-onset sepsis (LOS) in preterm infants.
  • Gut dysbiosis, or an imbalance in gut bacteria, is a suspected mechanism linking antibiotics to increased LOS risk.
  • The specific microbial factors and host responses involved remain incompletely understood.

Purpose of the Study:

  • To investigate the relationship between gut microbiota development and LOS risk in preterm infants exposed to early antibiotics.
  • To identify microbial biomarkers associated with delayed gut maturation and increased LOS.
  • To explore potential therapeutic interventions targeting gut microbiota to prevent LOS.

Main Methods:

  • Analysis of 4,938 longitudinal fecal samples from preterm infants across China, the US, and the UK.
  • Correlation of gut microbiota development pace with LOS risk and antibiotic exposure.
  • In vitro and in vivo studies using bacterial supplementation (Enterococcus faecium, Limosilactobacillus reuteri) and NOD2 receptor activation in neonatal mice.
  • Pilot randomized controlled trial assessing L. reuteri supplementation in preterm infants.

Main Results:

  • Preterm infants exhibited differential rates of gut microbiota development, with delayed maturation linked to over one-third of LOS risk from early antibiotics.
  • A deficiency in bacterial DL-endopeptidase was a hallmark of delayed microbiota development and correlated with higher LOS risk.
  • Supplementation with DL-endopeptidase-producing bacteria activated the NOD2 receptor, modulated macrophage responses, reduced hyperinflammation, and protected mice from LOS.
  • L. reuteri supplementation enhanced fecal NOD2 activation in a pilot trial with preterm infants.

Conclusions:

  • Microbiota immaturity and reduced DL-endopeptidase activity are linked to antibiotic exposure and increased LOS risk in preterm infants.
  • Bacterial DL-endopeptidase, via NOD2 activation, represents a potential therapeutic target and biomarker for LOS prevention.
  • Further clinical validation is warranted for the translation of these findings into clinical practice.