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Updated: Jun 23, 2026

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
ChatGPT Versus DeepSeek for Breast Cancer Information Retrieval: Quantitative Comparative Study
Rima Hajjo1, Dima A Sabbah1, Sanaa K Bardaweel2
1Department of Pharmacy, Faculty of Pharmacy, Al-Zaytoonah University of Jordan, Airport Street, P.O. Box 130, Amman, 11733, Jordan, 962 64291511.
Background:
Artificial intelligence (AI) is increasingly used to generate medical content, yet its performance in delivering clinically relevant and reliable information remains underexplored, especially in complex areas such as breast cancer.
Objective:
This study aimed to compare ChatGPT-4.0 and DeepSeek-V3 in generating breast cancer information, focusing on readability, content quality, and citation reliability.
Methods:
On the basis of publicly available patient education materials, 10 frequently asked questions were selected. Each model generated 60 responses. Three expert reviewers rated each response using a 7-point Likert scale across 5 dimensions (ie, accuracy, completeness, clarity, depth and insight, and alignment with expert answers). Readability was assessed using Flesch-Kincaid Grade Level scores. Information reliability was evaluated through interrater agreement metrics, including Cohen κ and Fleiss κ. Paired t tests were used for statistical comparisons.
Results:
AI models produced significantly more readable content than expert references (mean Flesch-Kincaid Grade Level difference -2.60; P<.001). ChatGPT-4.0 responses were more stylistically consistent with a median Flesch-Kincaid Grade Level score of 10.66 (IQR 0.98), whereas DeepSeek-V3 showed greater variability with a median Flesch-Kincaid Grade Level score of 10.17 (IQR 1.41). Content quality scores were DeepSeek-V3 achieving a higher mean score than ChatGPT-4.0 (6.22 [SD 0.43] vs 6.01 [SD 0.49]). In the multiresponse analysis, DeepSeek-V3 demonstrated a statistically significant advantage in accuracy (P=.041), while differences across other criteria were not statistically significant (P>.05). Human raters showed almost perfect agreement when judging source reliability (Fleiss κ=0.842 for ChatGPT's citations and 0.935 for DeepSeek's citations). Agreement between each model's citation reliability scores and the expert majority was substantial for ChatGPT (Cohen κ=0.665) and higher for DeepSeek (Cohen κ=0.782).
Conclusions:
Both models generated readable and clinically relevant content with comparable overall performance. ChatGPT provided more consistent readability, while DeepSeek offered more diverse references with stronger alignment to expert ratings. Continued evaluation and quality assurance are essential for the responsible clinical use of AI-generated content.
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