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Updated: Mar 6, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
METTL3 Methylation Induces Decay of Endogenous Retroelement Transcripts to Promote Tumor Immune Evasion
Xiaowei She1, Jingqin Lan2, Haokun Zhang1
1Gastrointestinal Cancer Research Institute, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Abstract:
Colorectal cancer progression and recurrence persist as major clinical challenges. Emerging evidence underscores that cross-talk between malignant cells and the immunosuppressive microenvironment facilitates tumor relapse, and elucidating the mechanistic details of this cross-talk could help guide the development of improved therapies. In this study, we identified dimethylation of lysine 513 (K513) on methyltransferase-like 3 (METTL3) as a key modification associated with colorectal cancer progression and recurrence. Mechanistically, SETD1A catalyzed METTL3 K513 methylation, enhancing its binding affinity to S-adenosylmethionine and augmenting RNA N6-methyladenosine deposition. METTL3 methylation suppressed endogenous retroelements expression, leading to impaired type I IFN responses and tumor immune evasion. Fluorouracil induced an E2F4/SETD1A/METTL3 regulatory axis, wherein E2F4 self-regulation activated SETD1A to drive METTL3 methylation. Targeting this axis through pharmacologic inhibition of E2F4 or genetic disruption of METTL3 methylation, in combination with immune checkpoint blockade (ICB), significantly suppressed tumor growth. These findings unveil a methylation-dependent regulatory mechanism that reshapes the tumor immune microenvironment, offering a therapeutic strategy for colorectal cancer.
Significance:
Suppression of endogenous retroelements and type I interferon signaling mediated by E2F4/SETD1A-induced METTL3 K513 methylation can be targeted to restore antitumor immunity and enhance responsiveness to immune checkpoint blockade in colorectal cancer.
Insights
Methylation of METTL3 (methyltransferase-like 3) at K513 is crucial for colorectal cancer progression. Targeting this pathway with therapies, combined with immune checkpoint blockade, shows promise for treating CRC.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- Colorectal cancer (CRC) recurrence and progression remain significant clinical issues.
- Tumor microenvironment crosstalk with malignant cells promotes relapse.
- Understanding these mechanisms is key to developing better CRC therapies.
Purpose of the Study:
- To identify key molecular modifications driving CRC progression and recurrence.
- To elucidate the mechanistic role of METTL3 methylation in the tumor immune microenvironment.
- To explore novel therapeutic strategies targeting the identified pathway.
Main Methods:
- Identified K513 di-methylation on METTL3 as a critical modification in CRC.
- Determined SETD1A catalyzes METTL3 K513 methylation, enhancing RNA m⁶A deposition.
- Investigated the E2F4/SETD1A/METTL3 axis induced by fluorouracil.
Main Results:
- METTL3 methylation enhances binding to SAM, increasing RNA m⁶A deposition.
- METTL3 methylation suppresses retroelements, impairing type I interferon responses and promoting immune evasion.
- Targeting E2F4 or METTL3 methylation synergized with immune checkpoint blockade to inhibit tumor growth.
Conclusions:
- Discovered a methylation-dependent mechanism regulating the tumor immune microenvironment in CRC.
- METTL3 K513 methylation is a driver of CRC progression and immune evasion.
- Targeting the E2F4/SETD1A/METTL3 axis offers a potential therapeutic strategy for CRC.
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