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Updated: Mar 9, 2026

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
Predicting antifungal concentrations that select for resistance: an enhanced approach to establish environmental
Isobel C Stanton1, Dominic P Brass1, Holly J Tipper1
1UK Centre for Ecology & Hydrology, Wallingford, Oxfordshire OX10 8BB, United Kingdom.
Abstract:
Antifungal resistance (AFR) is an emerging threat. Understanding the concentrations at which antifungals select for resistance is critical for guiding policy to minimise risks. This study aimed to determine predicted no effect concentrations for resistance (PNECRs) for antifungals in water and soil. PNECRs for water (PNECRswater) were derived from species sensitivity distributions fitted using a Maximum Likelihood Estimation approach to estimate the lower 5th percentile Hazard Concentrations (HC5s) from censored species/compound level MIC data and applying a 10-fold assessment factor. PNECRswater ranged from 5.67x10-4 (clotrimazole) to 7.94 µg/L (nystatin). PNECRs derived using standard methodologies that do not account for censoring are always higher, and therefore less conservative for environmental protection, than when considering censoring. PNECRs for soil (PNECRssoil) were derived by applying soil partitioning coefficients to PNECRswater for each antifungal, thereby providing an estimate for the bulk soil concentration needed to achieve the PNECRwater in soil pore water. These ranged from 2.26x10-6 (voriconazole) to 2.16 mg/kg (nystatin). Risk quotients were generated from measured environmental concentrations, and 6.54% for water (n = 200) and 12.5% for soil (n = 1) were over 1, suggesting selection for AFR could be occurring. This type of data generation and analyses will inform discussions about targeted mitigation strategies to reduce the risk of selection for AFR, however, PNECR estimations can be improved with increased data for certain compounds, particularly agricultural fungicides. Preventing an increase in resistance is critical for reducing the risk posed to human health from exposure to environmental AFR.
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