Technical benchmarking of library preparation kits for accurate WGS of picogram-level Mycobacterium tuberculosis DNA without whole-genome amplification
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Published on: June 13, 2025
P Siyengu1, J Loubser1, R M Warren1
1Department of Biomedical Sciences, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Abstract:
Whole‑genome sequencing of GC rich Mycobacterium tuberculosis is constrained by low DNA input. We compared two standard and two specialised low‑input library preparation kits using picogram‑level DNA without whole‑genome amplification. Standard enzymatic fragmentation kits produced more consistent coverage and variant fidelity across inputs.

