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Updated: Mar 11, 2026

Segmentation and Linear Measurement for Body Composition Analysis using Slice-O-Matic and Horos
Published on: March 21, 2021
Estimating proton density fat fraction using computed tomography attenuation in skeletal muscle and adipose tissue in
Rachel J Fenske1, Jevin Lortie1, Luke M Vander Kooy1
1Department of Nutritional Sciences, University of Wisconsin, Madison, WI, United States.
Background:
Proton density fat fraction (PDFF) measured using magnetic resonance imaging (MRI) is considered a noninvasive reference measure of fat deposition in various tissues and has been proposed as a quantitative indicator of tissue quality. Although the contraindications of MRI limit PDFF as a routine clinical tool, computed tomography (CT) scans are often available clinically. Currently, there are no standard methods to compare CT and MRI tissue density measures.
Objectives:
The objective of this study was to determine the relationship between CT and MRI tissue density values in skeletal muscle and subcutaneous adipose tissue (SAT).
Methods:
Tissue density (using same-day CT and MRI) was assessed for both muscle and SAT in a healthy prospective clinical cohort [n = 50, 23 males, 27 females; mean age: 57 ± 5 y; BMI (kg/m2): 27 ± 5]. Comparisons using small regions of interest and entire cross-sectional areas (CSAs) were made at both L1 and L3 vertebral levels. CT CSA was measured using automated artificial intelligence-based segmentation software. All other measurements were demarcated manually. Regressions with 95% confidence intervals were fitted separately for each comparison.
Results:
A strong negative linear correlation was found for all CT Hounsfield unit (HU)-PDFF tissue density pairings. The strongest association for skeletal muscle tissue density was measured at L3 using CSA [PDFF (%) = -0.352 × mean CT attenuation (HU) + 26.4; r2 = 0.791]. The strongest linear correlation for SAT density was identified at L1 using CSA [PDFF (%) = -0.604 × mean CT attenuation (HU) + 31.2; r2 = 0.885].
Conclusions:
It is feasible to convert density values from CT scans to accurate estimates of PDFF in skeletal muscle and SAT. Conversion of tissue density values from CT HU to estimated PDFF expands clinical measures of muscle quality and improves body composition assessment.

