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Genome-wide Analysis of Histone Modifications Distribution using the Chromatin Immunoprecipitation Sequencing Method in Magnaporthe oryzae
Published on: June 2, 2021
The Lsm1-7 complex couples 3'-end protection to histone H4 acetylation to maintain mRNA homeostasis in Fusarium
Yiyi Ren1, Jiayue Yan1, Xingmin Han1
1State Key Laboratory of Rice Biology and Breeding, Zhejiang Key Laboratory of Biology and Ecological Regulation of Crop Pathogens and Insects, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China.
Abstract:
Eukaryotic messenger RNA (mRNA) homeostasis requires precise coordination between synthesis and decay, yet the mechanisms governing this balance in fungal pathogens remain elusive. Here we provide a comprehensive characterization of the Lsm1-7 complex in the cereal pathogen Fusarium graminearum. We show that Lsm1-7 assembles into a conserved hetero-heptameric module that localizes to processing bodies (P-bodies) and is required for fungal growth, virulence, and mycotoxin biosynthesis. Mechanistically, Lsm1-7/Pat1 binds U/A-rich 3' termini of a defined set of transcripts enriched for central metabolism and restrains their 3'-5' decay. Genetic suppressor analyses and mechanistic dissection identify two parallel decay routes antagonized by Lsm1-7, including the exosome recruited by the uridyltransferase Cid1 and the Ski-exosome complex mediated by the newly identified scaffold protein Lsp1. Moreover, loss of Lsm1-7 elicits a compensatory transcriptional response involving the Rpd3L (Sin3) histone deacetylase complex, in which elevated histone H4 acetylation at affected loci partially restores transcript output. Together, our results define an integrated cytoplasmic-nuclear regulatory axis in F. graminearum that couples 3'-end protection to chromatin-based transcriptional buffering to maintain mRNA homeostasis. While Lsp1 appears lineage-adapted, the underlying logic may reflect a broader principle of gene-expression buffering that supports fungal fitness and pathogenicity.
Insights
The Lsm1-7 complex in Fusarium graminearum regulates messenger RNA (mRNA) decay, impacting fungal growth and virulence. It balances transcript levels through cytoplasmic and nuclear mechanisms, crucial for fungal pathogenicity.
Area of Science:
- Molecular Biology
- Mycology
- Gene Regulation
Background:
- Eukaryotic mRNA homeostasis relies on balancing synthesis and decay.
- Mechanisms controlling mRNA stability in fungal pathogens are not fully understood.
- The Lsm1-7 complex is a key regulator of mRNA decay in eukaryotes.
Purpose of the Study:
- To characterize the Lsm1-7 complex in the fungal pathogen Fusarium graminearum.
- To elucidate the role of Lsm1-7 in fungal growth, virulence, and mycotoxin production.
- To define the regulatory mechanisms of mRNA homeostasis in F. graminearum.
Main Methods:
- Biochemical characterization of the Lsm1-7 complex.
- Localization studies in F. graminearum.
- Genetic analyses including suppressor screens.
- Transcriptional and epigenetic analyses.
Main Results:
- Lsm1-7 forms a hetero-heptameric module localized to P-bodies, essential for fungal growth and virulence.
- Lsm1-7/Pat1 restrains 3'-5' decay of specific transcripts by binding their 3' termini.
- Two parallel decay pathways (Cid1-exosome and Ski-exosome/Lsp1) are antagonized by Lsm1-7.
- Loss of Lsm1-7 triggers compensatory transcriptional responses involving Rpd3L histone deacetylase complex and histone acetylation.
Conclusions:
- Lsm1-7 acts as a central regulator of mRNA homeostasis in F. graminearum.
- An integrated cytoplasmic-nuclear regulatory axis couples mRNA 3'-end protection with chromatin-based buffering.
- These mechanisms are critical for maintaining fungal fitness and pathogenicity.
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