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A Depth-Controlled Longitudinal Cutting Strategy Enhances MALDI-MSI of Entire Leaves
Ying Chen1,2, Chunping Tang2, Jian Sui3
1University of Chinese Academy of Sciences, Beijing 100049, China.
Analytical Chemistry
|March 11, 2026
Summary
We developed a new depth-controlled longitudinal cutting (DCLC) method for plant leaf analysis using MALDI-MSI. This technique improves spatial metabolite insights by enabling precise longitudinal sectioning of leaf tissues.
Area of Science:
- Plant science
- Metabolomics
- Analytical chemistry
Background:
- Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) is crucial for spatial metabolite analysis in plant leaves.
- Longitudinal sectioning offers detailed insights into tissue heterogeneity but is technically challenging.
Purpose of the Study:
- To develop a novel depth-controlled longitudinal cutting (DCLC) strategy for plant leaf processing.
- To enable high-resolution spatial analysis of metabolites within leaf tissues using MALDI-MSI.
Main Methods:
- An in-house device was utilized for depth-controlled longitudinal cutting of various plant leaves.
- Sections as thin as 5 μm were prepared, with 30 μm chosen to optimize tissue integrity and MALDI-MSI performance.
- The DCLC strategy facilitates exposure of internal tissues and reduces ion suppression from cuticles.
Main Results:
- The DCLC strategy successfully produced thin longitudinal leaf sections suitable for MALDI-MSI.
- This method enhances the detection of internal metabolites by minimizing cuticle interference.
- Multiple sections can be obtained from a single leaf, allowing for multi-plane analysis.
Conclusions:
- DCLC is an effective method for preparing plant leaf samples for detailed spatial metabolomic studies.
- This technique advances the application of MALDI-MSI for understanding plant metabolic spatial variations.
- DCLC offers potential for resolving complex metabolic zonation within leaf tissues.

