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Updated: Mar 13, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Bridging graph structure and knowledge-guided editing for interpretable temporal knowledge graph reasoning
Shiqi Fan1, Quanming Yao2, Hongyi Nie3
1School of Cybersecurity, Northwestern Polytechnical University, Xi'an, 710072, Shaanxi, China; Department of Data Science and Artificial Intelligence, The Hong Kong Polytechnic University, Hong Kong, 999077, China.
Abstract:
Temporal knowledge graph reasoning (TKGR) aims to predict future events by inferring missing entities with dynamic knowledge structures. Existing LLM-based reasoning methods prioritize contextual over structural relations, struggling to extract relevant subgraphs from dynamic graphs. This limits structural information understanding, leading to unstructured, hallucination-prone inferences especially with temporal inconsistencies. To address this problem, we propose IGETR (Integration of Graph and Editing-enhanced Temporal Reasoning), a hybrid reasoning framework that combines the structured temporal modeling capabilities of Graph Neural Networks (GNNs) with the contextual understanding of LLMs. IGETR operates through a three-stage pipeline. The first stage aims to ground the reasoning process in the actual data by identifying structurally and temporally coherent candidate paths through a temporal GNN, ensuring that inference starts from reliable graph-based evidence. The second stage introduces LLM-guided path editing to address logical and semantic inconsistencies, leveraging external knowledge to refine and enhance the initial paths. The final stage focuses on integrating the refined reasoning paths to produce predictions that are both accurate and interpretable. Experiments on standard TKG benchmarks show that IGETR achieves state-of-the-art performance, outperforming strong baselines with relative improvements of up to 5.6% on Hits@1 and 8.1% on Hits@3 on the challenging ICEWS datasets. Additionally, we execute ablation studies and additional analyses confirm the effectiveness of each component.
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