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Updated: Jun 16, 2026

Workflow and Tools for Crystallographic Fragment Screening at the Helmholtz-Zentrum Berlin
Published on: March 3, 2021
The human TIMP-1 unbound structure provides a platform for fragment screening.
Ahmed Shemy1, Jana Van Broeckhoven2, Niels Hellings2
1Biomolecular Modelling and Design Lab, Department of Chemistry, University of Leuven, Celestijnenlaan 200G, 3001 Heverlee, Belgium.
The first unbound crystal structure of human Tissue Inhibitor of Metalloproteinases-1 (TIMP-1) reveals its structural plasticity. This provides a basis for developing new TIMP-1 targeted therapies for cancer and multiple sclerosis.
Area of Science:
- Structural biology
- Biochemistry
Background:
- Tissue inhibitor of metalloproteinases-1 (TIMP-1) regulates extracellular matrix remodeling and remyelination.
- TIMP-1 is a therapeutic target in cancer due to its role in tumorigenic signaling.
- No unbound structure of TIMP-1 was previously available.
Purpose of the Study:
- To determine the first unbound crystal structure of human TIMP-1.
- To provide a structural basis for the discovery of TIMP-1 ligands.
Main Methods:
- X-ray crystallography at 1.95 Å resolution.
- Structure comparison with MMP-bound TIMP-1 complexes.
- Crystallization optimization using additive screens.
Main Results:
- The first high-resolution unbound crystal structure of human TIMP-1 was determined.
- The unbound structure exhibits localized conformational changes and altered hydrogen bonding compared to MMP-bound forms.
- The structure indicates increased structural plasticity in unbound TIMP-1.
- The crystal form is suitable for drug screening.
Conclusions:
- The determined unbound TIMP-1 structure offers insights into its conformational flexibility.
- This structure serves as a foundation for structure-based drug discovery targeting TIMP-1.
- Potential therapeutic applications include cancer and demyelinating disorders like multiple sclerosis.
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