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Standardized Modular Assembly of Polycistronic Operons with Modular Cloning (MoClo) using the In-Cloning toolkit
Published on: September 2, 2025
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Modular toolkit to facilitate molecular manipulations in mycobacteria
Asis Kumar Khuntia1,2, Ankita Dabla3, Yogita Kapoor1,2
1CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Journal of Bacteriology
|March 16, 2026
Summary
Researchers developed a versatile toolkit of 40 new shuttle vectors for gene expression in mycobacteria. This system enhances flexibility for protein tagging, localization studies, and complex purification, advancing mycobacterial research.
Area of Science:
- Molecular Biology
- Microbiology
- Genetics
Background:
- Gene expression in mycobacteria is essential for studying pathogens.
- Existing Escherichia coli-mycobacterium shuttle vectors lack flexibility for genetic manipulation.
- Limitations include restricted options for epitope tags, selectable markers, and fluorescent reporters.
Purpose of the Study:
- To create a modular toolkit of integrative and episomal shuttle vectors for enhanced gene expression in mycobacteria.
- To provide greater flexibility for incorporating various tags and reporters.
- To facilitate advanced genetic and cell biological studies in mycobacteria.
Main Methods:
- Developed 32 integrative and 8 episomal Escherichia coli-mycobacterium shuttle vectors.
- Incorporated N- or C-terminal tags (SBP-HA-S, 3×-FLAG, GFP, mCherry).
- Utilized four distinct phage systems with unique antibiotic resistance markers for integrative vectors.
Main Results:
- Successfully validated the system in Mycobacterium smegmatis, expressing RbpA.
- Demonstrated protein localization using fluorescent tags (Wag31, FtsZ).
- Enabled simultaneous co-expression of four Mycobacterium tuberculosis sigma factors and efficient two-step purification of protein complexes using SBP-HA-S tag.
Conclusions:
- The novel toolkit offers a versatile platform for gene complementation, protein localization, and multi-protein co-expression in mycobacteria.
- The SBP-HA-S tandem affinity tag facilitates efficient purification of native protein complexes.
- These tools will significantly aid mycobacterial research and pathogen studies.

