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Updated: Mar 18, 2026

Primer for Immunohistochemistry on Cryosectioned Rat Brain Tissue: Example Staining for Microglia and Neurons
Published on: May 12, 2015
Protocol for visualizing microglial lysosomal content by immunohistochemistry in the rodent brain
Celeste Laporte1, Masha Prager-Khoutorsky1
1Physiology Department, McGill University, Montreal, QC H3A 0G4, Canada.
This study details a protocol to visualize phagocytosed material within microglia lysosomes in rodent brains. The method uses immunohistochemistry and confocal microscopy for detailed analysis of microglial function.
Area of Science:
- Neuroscience
- Cell Biology
Background:
- Microglia are the primary immune cells of the central nervous system.
- They play a crucial role in clearing cellular debris and pathogens.
- Understanding microglial phagocytosis is vital for studying neurological disorders.
Purpose of the Study:
- To present a detailed protocol for visualizing phagocytosed content within microglia.
- To enable the study of microglial phagocytic activity in various neurological conditions.
- To facilitate 3D reconstruction and analysis of microglia and their lysosomes.
Main Methods:
- Immunohistochemistry on rodent brain tissue.
- Confocal microscopy for high-resolution imaging.
- Detailed steps for tissue staining, image acquisition, and lysosome analysis.
- 3D reconstruction techniques for microglia and lysosomes.
Main Results:
- A reproducible protocol for visualizing phagocytosed material within microglia lysosomes.
- Method allows for detailed analysis of microglial phagocytic function.
- Enables 3D visualization of microglia and their lysosomal contents.
Conclusions:
- The developed protocol provides a robust method for studying microglial phagocytosis.
- This technique can be applied to investigate the role of microglia in brain health and disease.
- Facilitates deeper understanding of microglial clearance mechanisms.
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