A model for drug transport across two membranes of Gram-negative bacteria by an MFS tripartite assembly

Zhaojun Zhong1, Tuerxunjiang Maimaiti1, Matthew L Jackson2,3

  • 1School of Life Science and Technology, ShanghaiTech University, Shanghai, China.

Nature Communications
|March 17, 2026
PubMed

Insights

Researchers elucidated the structure of a key bacterial efflux pump, EmrAB-TolC, revealing its assembly and drug transport mechanism. This finding advances understanding of antibiotic resistance in Gram-negative bacteria.

Area of Science:

  • Structural biology
  • Microbiology
  • Biochemistry

Background:

  • Bacterial cell envelope transport is vital for survival and antibiotic resistance.
  • Gram-negative bacteria require complex machinery for transport across dual membranes.
  • Major Facilitator Superfamily (MFS)-type tripartite efflux pumps are crucial for drug extrusion but their structure is poorly understood.

Purpose of the Study:

  • To determine the high-resolution structure of the EmrAB-TolC efflux pump.
  • To elucidate the assembly architecture and structural mechanism of MFS-type tripartite efflux pumps.
  • To identify key residues and functional mechanisms involved in multidrug transport.

Main Methods:

  • High-resolution cryo-electron microscopy (cryo-EM) to determine the structure of EmrAB-TolC.
  • Mutagenesis studies to identify essential residues for pump assembly and function.
  • Antibiotic sensitivity assays to validate the functional role of identified residues.

Main Results:

  • The high-resolution (3.13 Å) structure of the EmrAB-TolC pump was determined.
  • A distinct, asymmetric architecture was revealed with a TolC:EmrA:EmrB ratio of 3:6:1.
  • Essential contacts for pump assembly and key drug transport residues were identified.

Conclusions:

  • The study provides unprecedented structural insights into a representative MFS-type tripartite efflux pump.
  • Structural and functional data support a model for one-step drug transport across the Gram-negative bacterial envelope.
  • Findings contribute to understanding antibiotic resistance mechanisms and potential therapeutic targets.

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