Related Experiment Video
Updated: Mar 18, 2026

Transmembrane Domain Oligomerization Propensity determined by ToxR Assay
Published on: May 26, 2011
Oligomerization-competent PIF4 drives thermomorphogenesis through functional redundancy in transactivation and DNA
Haibo Xiong1, Abhishesh Bajracharya1, Ranjeeta Odari1
1Department of Biology, University of Mississippi, University, MS, USA.
None:
Plants tailor their architecture to warm temperatures through the central transcription factor PHYTOCHROME-INTERACTING FACTOR 4 (PIF4). Here, we dissect how structured and disordered regions of PIF4 contribute to its function in thermomorphogenesis. A long N-terminal intrinsically disordered region (IDR) enables PIF4 to form low-mobility condensates. Within this IDR, we identify an acidic transactivation domain (TAD) and an extended basic segment that carries a nuclear-localization signal and the canonical basic motif of the basic helix-loop-helix (bHLH) domain. The basic segment is both necessary and sufficient to drive PIF4 condensate formation, while the TAD tunes condensate properties. Strikingly, alanine substitutions that abolish TAD-mediated transactivation, disrupt DNA binding, or greatly reduce phase-separation propensity have no significant effect on thermomorphogenetic hypocotyl elongation. By contrast, substituting twelve basic residues within the basic segment, which disrupts both DNA binding and HLH-mediated oligomerization, abolishes thermo-induced hypocotyl growth. These findings suggest that PIF4's oligomerization competence contributes significantly to thermomorphogenesis by enabling partner recruitment, allowing DNA-binding and transactivation functions to be supplied in trans.
Related Concept Videos
Cooperative Binding of Transcription Regulators
General Transcription Factors
Combinatorial Gene Control
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
Co-activators and Co-repressors
Master Transcription Regulators

