Exploring the binding dynamics of triazolyl-thio-oxazines for MDM2-p53 disruption: Design, synthesis, and p53

Bhanuprakash C Narasimhachar1, Omantheswara Nagaraja2, Kwang Seok Ahn3

  • 1Department of Chemistry, Yuvaraja's College, University of Mysore, Mysuru, 570005, Karnataka, India.

Insights

New triazolyl-thio-oxazines were designed to inhibit the mouse double minute 2 homolog (MDM2)-p53 interaction, a cancer target. Compound 4a showed potent anticancer activity by stabilizing p53, making it a promising therapeutic candidate.

Area of Science:

  • Medicinal Chemistry
  • Molecular Biology
  • Computational Chemistry

Background:

  • The mouse double minute 2 homolog (MDM2)-p53 interaction is crucial in cancer, as MDM2 inactivates the tumor suppressor p53.
  • Inhibiting the MDM2-p53 interaction is a validated strategy for cancer therapy.

Purpose of the Study:

  • To design and synthesize novel compounds targeting the MDM2-p53 interaction based on a three-finger pharmacophore model.
  • To evaluate the binding affinity, stability, pharmacokinetic properties, and anticancer efficacy of the designed compounds.

Main Methods:

  • Rational drug design using a three-finger pharmacophore model.
  • Synthesis and characterization of four triazolyl-thio-oxazines (4a-d) using NMR, IR, mass spectrometry, and X-ray crystallography (for 4a).
  • In silico studies including molecular dynamics simulations and MM-GBSA analysis.
  • In vitro cytotoxicity assays (MCF-7 cells) and western blot analysis to assess p53 and p21 upregulation.

Main Results:

  • All synthesized compounds (4a-d) bound to the MDM2 binding site with high affinity.
  • Compound 4a exhibited superior binding stability and a favorable MM-GBSA binding score compared to Nutlin-3a and p53 peptide.
  • Compound 4a demonstrated potent cytotoxicity against MCF-7 breast cancer cells (IC50 = 4.379 μM) and significantly upregulated p53 and p21.
  • Differential effects on p53/p21 levels in different cell lines confirmed wild-type p53 upregulation.

Conclusions:

  • The designed triazolyl-thio-oxazines effectively inhibit the MDM2-p53 interaction.
  • Compound 4a shows significant promise as an MDM2-p53 interaction inhibitor with favorable drug-like properties.
  • Further biological evaluation of compound 4a is warranted for its potential as a cancer therapeutic.