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Self-assembly of Complex Two-dimensional Shapes from Single-stranded DNA Tiles
Published on: May 8, 2015
Tilings of a bounded region of the plane by maximal one-dimensional tiles
Eduardo J Aguilar1, Valmir C Barbosa2, Raul Donangelo3,4
1Universidade Federal de Alfenas, Instituto de Ciência e Tecnologia, Poços de Caldas, MG 37715-400, Brazil.
Abstract:
We study the tiling of a two-dimensional region of the plane by K-cell one-dimensional tiles, or K-mers. Unlike previous studies, which typically allowed for one single value of K or sometimes a small assortment of fixed values, here a tiling may concomitantly employ K-mers comprising any number K of cells, provided a maximality constraint is satisfied. In essence, this constraint requires each of the K-mers in use to be as lengthy as possible, given its surroundings in the resulting tiling. Maximality aims to limit the variety of possible tilings while allowing for interesting behavior in terms of the statistical physical observables of interest. In fact, by introducing an energy function based on cell contacts and parametrizing it appropriately, we have been able to observe relatively unexpected behavior, including the suggestion of phase transitions as the system's temperature evolves.
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