Related Experiment Video
Updated: Mar 21, 2026

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
In Silico Discovery and Characterization of a Novel Nuclear Transcription Factor-Y (NF-Y) Inhibitor with
Reza Ebrahimighaei1, Jon Lees1, Robin A Corey2
1Translational Health Sciences Bristol Medical School, University of Bristol, Bristol BS2 8HW, U.K.
Abstract:
Nuclear Transcription Factor-Y (NF-Y) is a transcription factor that binds CCAAT motifs to regulate gene expression, controlling cell proliferation, metabolism, and differentiation. NF-Y dysregulation contributes to diverse pathologies, including cancer, neurological disorders, cardiovascular disease, and tissue fibrosis. Using in silico molecular docking, we screened a library of eight million compounds to identify molecules targeting a pocket on the NF-YB/NF-YC dimer. We identified one compound, designated NFYi5, that was able to reduce the NF-Y activity. NFYi5 reduced mRNA levels of NF-Y target genes, while sparing housekeeping gene expression, and inhibiting cell proliferation. Mechanistic studies revealed that NFYi5 impaired NF-Y-DNA binding and accelerated NF-YA protein degradation, reducing its half-life from 16.5 ± 1.5 h to 8.5 ± 0.7 h. Together, these data establish NFYi5 as a small-molecule that can reduce NF-Y activity and is associated with antimitogenic properties. This proof-of-concept study demonstrates that NF-Y is pharmacologically tractable and highlights NFYi5 as a potential lead compound for therapeutic development in NF-Y-driven diseases.
Insights
Researchers identified NFYi5, a novel small molecule that inhibits Nuclear Transcription Factor-Y (NF-Y) activity. This compound reduces cancer cell proliferation by impairing NF-Y DNA binding and accelerating protein degradation.
Area of Science:
- Molecular Biology
- Pharmacology
- Biochemistry
Background:
- Nuclear Transcription Factor-Y (NF-Y) regulates genes controlling cell proliferation, metabolism, and differentiation.
- Dysregulation of NF-Y is implicated in various diseases, including cancer and fibrosis.
- Targeting NF-Y presents a potential therapeutic strategy for NF-Y-driven pathologies.
Purpose of the Study:
- To identify small molecules that inhibit NF-Y activity.
- To characterize the mechanism of action and therapeutic potential of identified inhibitors.
Main Methods:
- In silico molecular docking screened eight million compounds against the NF-YB/NF-YC dimer.
- NFYi5 activity was assessed by measuring mRNA levels of NF-Y target genes.
- Mechanistic studies evaluated NF-Y DNA binding and NF-YA protein stability.
Main Results:
- NFYi5 was identified as a potent inhibitor of NF-Y activity.
- NFYi5 reduced NF-Y target gene expression and inhibited cancer cell proliferation.
- NFYi5 impaired NF-Y DNA binding and decreased NF-YA protein half-life from 16.5 to 8.5 hours.
Conclusions:
- NF-Y is a pharmacologically tractable target.
- NFYi5 demonstrates antimitogenic properties and is a promising lead compound for therapeutic development.
- This study validates NF-Y as a target for treating diseases driven by its aberrant activity.
More Related Videos
Related Concept Videos
NF-κB-dependent Signaling Pathway
NF-κB-dependent Signaling Mechanism
The...
Methods of Nuclear Reprogramming
Co-activators and Co-repressors
Eukaryotic Transcription Inhibitors
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
NF-kB-dependent Signaling Pathway
Transducer Mechanism: Nuclear Receptors
About 48 different soluble family members of nuclear receptors are identified that can be divided into two main classes:

