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Updated: Mar 21, 2026

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
Published on: September 17, 2017
DP5 without DFT: uncertainty-calibrated graph neural net accelerates structure confirmation via NMR
Ruslan Kotlyarov1, Alexander Howarth1, Jonathan M Goodman1
1Yusuf Hamied Department of Chemistry Lensfield Road Cambridge CB2 1EW UK jmg11@cam.ac.uk.
None:
The evaluation and assignment of candidate structures to NMR spectra can be facilitated by the DP4 method, which assumes that one of the candidate structures is correct, and the DP5 method, which calculates the probability of a correct assignment for each candidate individually. Both of these methods require DFT calculations and thus a significant amount of computer resources. In this paper we present DP5q, a new version of DP5, which uses a graph convolutional neural network and quantile regression to replace the DFT-based algorithm. This dramatically increases the speed of the calculation at the cost of a modest decrease in accuracy. We demonstrate the efficacy of this rapid calculation both on a test set of thousands of molecules and also on cases selected for the difficulty of assigning the structure.
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