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A WYL transcriptional regulator activates the DNA damage response pathway in Acinetobacter species
Taylor J Ellison1, Taylor A Smith1, Neha Vennapusa1
1Department of Microbiology, University of Georgia, Athens, GA 30602, United States.
Abstract:
The ability to sense DNA damage and activate DNA damage response pathways is critical for repairing DNA damage in all domains of life. The most well studied pathway for DNA damage repair (DDR) in bacteria includes the "save our souls" (SOS) pathway, although many components of this pathway are missing in the Acinetobacter clade. One aspect of DDR pathways includes the inhibition of cell division to prevent the inheritance of damaged DNA by daughter cells, the mechanism of which is also unknown in Acinetobacter. In this work, we show the cell filamentation factor AciT acts as a cell division inhibitor that confers a fitness advantage in the presence of DNA damage-inducing agents. Suppressor mutations that permit cell viability in conditions with constitutively active AciT mapped to a WYL family transcriptional regulator, DdaA, which we demonstrate acts as an activator of aciT expression. DdaA was also found to activate DDR pathway gene expression including recA via a conserved mechanism used by WYL family homologues to sense and respond to DNA damage. We further demonstrate that DdaA activates the expression of DDR pathway genes upon DNA uptake during natural transformation, identifying a new mechanism for how transcriptional control networks intersect to regulate bacterial responses in diverse environmental contexts.
Insights
Bacteria sense DNA damage using the AciT cell division inhibitor. A WYL family regulator, DdaA, activates AciT and DNA damage response genes, revealing a new bacterial damage response mechanism.
Area of Science:
- Bacterial genetics and molecular biology
- DNA damage response mechanisms
- Cell division regulation
Background:
- DNA damage sensing and repair are vital for all life.
- The Acinetobacter clade lacks key components of the canonical bacterial DNA damage response (DDR) pathway.
- Mechanisms of cell division inhibition during DDR are unknown in Acinetobacter.
Purpose of the Study:
- To investigate the role of the cell filamentation factor AciT in bacterial DNA damage response.
- To identify regulators of AciT and explore their function in DDR.
- To elucidate novel mechanisms of bacterial response to DNA damage and environmental cues.
Main Methods:
- Genetic analysis of suppressor mutations.
- Gene expression analysis (e.g., recA activation).
- Phenotypic analysis of bacterial growth and cell division under DNA-damaging conditions.
Main Results:
- AciT functions as a cell division inhibitor, providing a fitness advantage under DNA damage.
- The WYL family transcriptional regulator DdaA activates aciT expression.
- DdaA activates DDR genes, including recA, through a conserved WYL domain mechanism.
- DdaA also induces DDR gene expression during natural transformation (DNA uptake).
Conclusions:
- AciT is a key player in Acinetobacter's response to DNA damage by inhibiting cell division.
- DdaA acts as a DNA damage sensor and transcriptional activator, linking environmental sensing to DDR.
- This study reveals a novel intersection of transcriptional networks regulating bacterial responses in diverse contexts.
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