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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Genotype Association of VEGF Polymorphism rs2010963 with Strabismus in a Pakistani Cohort: A Case-Control Study
Muhammad Ahmad Khalid1, Noor-Ul-Ain Amin2, Conain Nehal2
1Department of Science, Buckingham Browne and Nichols School, Cambridge, MA, USA.
This study found that the GG genotype of VEGF polymorphism rs2010963 is significantly associated with an increased risk of strabismus in a Pakistani population. Further research in larger cohorts is recommended to confirm these genetic findings.
Area of Science:
- Genetics
- Ophthalmology
- Molecular Biology
Background:
- Strabismus is a common ocular misalignment with complex etiology.
- Vascular Endothelial Growth Factor (VEGF) plays a role in ocular development and vascularization.
- Genetic variations in VEGF may influence strabismus susceptibility.
Purpose of the Study:
- To investigate the association between VEGF gene polymorphism rs2010963 and strabismus prevalence.
- To determine if the GG genotype of rs2010963 increases strabismus risk in a Pakistani cohort.
Main Methods:
- Case-control study involving 43 strabismus patients and 170 healthy controls.
- Genotyping of VEGF polymorphism rs2010963 using Polymerase Chain Reaction Restriction Fragment Length Polymorphism (PCR-RFLP).
- Logistic regression analysis to assess the association between genotype and strabismus risk.
Main Results:
- The GG genotype frequency was significantly higher in strabismus patients (56%) compared to controls (29%).
- Individuals with the GG genotype had significantly higher odds of strabismus compared to the CC genotype (OR=5.76, p=0.0009).
- A non-significant trend for increased odds was observed for GG versus GC genotypes (OR=2.06, p=0.062).
Conclusions:
- VEGF polymorphism rs2010963, specifically the GG genotype, is significantly associated with strabismus in the studied Pakistani population.
- The findings suggest a potential genetic predisposition to strabismus linked to VEGF.
- Larger, age-matched cohorts are needed to validate these genetic associations.
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