Related Experiment Video
Updated: Mar 28, 2026

10:56
Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
70.1K
Ribosome Molecular Aging Shapes Translation Dynamics
Jordy F Botello1, Lifei Jiang1, Peter J Metzger1
1Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Biorxiv : the Preprint Server for Biology
|March 27, 2026
Summary
Cellular aging affects protein production. Older ribosomes, the cell's protein-making machinery, show impaired function, leading to translation errors and impacting organismal aging.
Area of Science:
- Molecular Biology
- Cellular Biology
- Aging Research
Background:
- Cellular homeostasis requires component renewal, but some complexes like ribosomes have long lifespans.
- The functional impact of extended molecular age on cellular components, particularly ribosomes, remains unclear.
Purpose of the Study:
- To develop a method for mapping the life stages of biomolecules within cells.
- To investigate how the age of ribosomes affects their function and translational dynamics.
Main Methods:
- Developed a spatiotemporal mapping strategy to track ribosome age and location.
- Analyzed ribosome function, including elongation, pausing, and termination, based on molecular age.
- Profiled ribosomal RNA modifications to assess age-related changes.
- Utilized pulse-chase labeling in *C. elegans* to study ribosome aging *in vivo*.
Main Results:
- Intracellular ribosome aging alters translational dynamics for specific transcripts.
- Aged ribosomes show impaired elongation at basic amino acid-rich sequences, causing pausing and premature termination.
- Molecular aging increases ribosome collision propensity in specific subpopulations.
- Enrichment of aged ribosomes amplifies age-dependent translation defects.
- *In vivo* studies in aged *C. elegans* confirmed aged ribosomes influence translational dynamics during organismal aging.
Conclusions:
- Ribosome molecular age is a key determinant of translational dynamics.
- Aging of ribosomes, a core gene-expression complex, is linked to organismal aging.
- The developed pulse-chase strategy maps macromolecular demographics in space and time.
Related Concept Videos
Termination of Translation
28.6K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
28.6K
Bacterial Protein Maturation
693
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
693
Improving Translational Accuracy
15.4K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
15.4K
Translational Regulation
807
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
807
Translation in Prokaryotes
2.4K
Prokaryote translation is a complex, highly coordinated process that converts genetic information from mRNA into functional proteins. It involves three stages: initiation, elongation, and termination, each facilitated by specific molecular components.Initiation of TranslationThe process begins with the assembly of the ribosomal subunits and initiation factors on the mRNA. In bacteria, the 30S ribosomal subunit recognizes the Shine-Dalgarno sequence in the mRNA, a conserved region upstream of...
2.4K
Ribosome Profiling
4.3K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.3K

