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Endometriosis at the Single-Cell Level: Molecular Insights and Implications for Assisted Reproduction Success
Angeliki Gerede1, Efthymios Oikonomou1, Foteini Gkaitatzi1
1Department of Obstetrics and Gynecology, Democritus University of Thrace, 691 00 Campus, Greece.
Biomolecules
|March 28, 2026
Summary
Single-cell analysis reveals cellular and molecular defects in endometriosis, explaining infertility and variable outcomes in assisted reproductive technology (ART). These findings pave the way for personalized treatments to improve reproductive health.
Area of Science:
- Reproductive Biology
- Cellular and Molecular Medicine
- Immunology
Background:
- Endometriosis is a chronic disorder causing infertility, characterized by ectopic endometrial tissue disrupting pelvic homeostasis.
- Single-cell 'omics' reveal cellular diversity and altered signaling in eutopic endometrium and lesions, impacting oocyte and embryo quality.
- This dysfunction contributes to inflammation, hormonal imbalance, and immune issues in endometriosis patients.
Purpose of the Study:
- To investigate the cellular and molecular mechanisms underlying infertility in endometriosis using single-cell analyses.
- To identify how cellular dysfunction in endometriosis affects assisted reproductive technology (ART) outcomes.
- To explore the potential of single-cell data for developing personalized therapeutic strategies.
Main Methods:
- Application of single-cell 'omic' technologies to analyze cellular diversity in endometriosis.
- Dissection of molecular signatures within individual cells from eutopic endometrium, lesions, oocytes, and granulosa cells.
- Integration of single-cell findings with clinical data on ART success rates.
Main Results:
- Single-cell analyses identified distinct cell populations with unique transcriptional profiles in endometriosis.
- Transcriptomic and epigenetic alterations in oocytes and endometrial cells affect mitochondrial function, steroid metabolism, and immune regulation.
- Evidence suggests endometriosis-associated infertility stems from coordinated ovarian and endometrial cellular defects, impacting implantation and ART success.
Conclusions:
- Single-cell studies provide mechanistic insights into endometriosis-associated reproductive failure, highlighting cellular-level dysfunctions.
- Candidate biomarkers identified can improve patient stratification and predict ART outcomes.
- Single-cell technologies are crucial for advancing precision reproductive medicine and personalized endometriosis management.

