Related Experiment Video
Updated: Mar 30, 2026

In Vitro Directed Evolution of a Restriction Endonuclease with More Stringent Specificity
Published on: March 25, 2020
Directed Evolution Improves the Catalytic Efficiency of APEX2-Mediated Proximity-Dependent RNA Labeling
Gang Wang1, Yi Li1, Peiyuan Meng1
1College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory For Molecular Sciences, PKU-IDG/McGovern Institute for Brain Research, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Beijing Advanced Center of RNA Biology (BEACON), Peking University, Beijing, China.
Researchers engineered ascorbate peroxidase APEX2 (APEX2) for improved proximity labeling. The enhanced APEX2 variant efficiently profiles the transcriptome near cellular structures, identifying new midbody-localized mRNA.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Engineered ascorbate peroxidase APEX2 is crucial for subcellular biomolecule profiling.
- Existing APEX2 variants show suboptimal catalytic efficiency with biotin-aniline probes.
Purpose of the Study:
- To enhance APEX2 activity for biotin-aniline probes using directed evolution.
- To develop an improved tool for spatially resolved transcriptomics.
Main Methods:
- Yeast surface display-based directed evolution was employed to engineer APEX2.
- The enhanced variant, L242FAPEX2, was validated for proximity labeling and transcriptomic profiling.
Main Results:
- L242FAPEX2 demonstrated a two-fold improvement in labeling efficiency.
- Spatially resolved transcriptomics near the midbody identified ANLN mRNA.
- ANLN mRNA targeting to the midbody was shown to be co-translational.
Conclusions:
- L242FAPEX2 is a versatile and improved tool for proximity labeling.
- This study advances spatially resolved transcriptomics in complex cellular environments.
Related Concept Videos
RNA Editing
Directing Proteins to the Rough Endoplasmic Reticulum
Labeling DNA Probes
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
RACE - Rapid Amplification of cDNA Ends

