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Related Experiment Video

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A tissue-resolved, network-based transcriptomic framework for abiotic stress responses in sorghum.

Dae Kwan Ko1,2,3, Federica Brandizzi1,2,3

  • 1MSU-DOE Plant Research Lab, Michigan State University, East Lansing, Michigan, 48824, USA.

The Plant Journal : for Cell and Molecular Biology
|March 29, 2026
PubMed
Summary
This summary is machine-generated.

Understanding how plants respond to stress is key to developing climate-resilient crops. This study maps sorghum

Keywords:
abiotic stressbioenergy cropsco‐expression networkgene regulatory networkspatiotemporal dynamicstissue specificitytranscriptomics

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Area of Science:

  • Plant Biology
  • Genomics
  • Climate Change Adaptation

Background:

  • Developing climate-resilient crops is crucial for global food security.
  • Sorghum exhibits remarkable tolerance to abiotic stresses, making it a model for studying stress responses.
  • Limited understanding exists on how different stress types, tissues, and time influence crop gene expression.

Purpose of the Study:

  • To create a comprehensive transcriptomic atlas of sorghum's response to drought, heat, and salinity stress.
  • To investigate the roles of tissue specificity and temporal dynamics in stress-induced gene expression.
  • To identify key regulatory networks and transcription factors involved in sorghum's stress tolerance.

Main Methods:

  • Comparative, time-resolved transcriptomic analysis of sorghum under drought, heat, and salinity stress.
  • Analysis of gene expression in both shoot and root tissues.
  • Co-expression network analysis, gene regulatory network (GRN) mapping, and cistrome analysis.

Main Results:

  • Tissue specificity was the primary driver of gene expression changes across all tested abiotic stresses.
  • Heat stress induced the most coherent and significant transcriptional and regulatory responses.
  • Identified tissue-specific gene modules, particularly those related to phytohormones, and key transcription factors controlling them.

Conclusions:

  • Sorghum's stress response is largely dictated by tissue-specific gene regulation.
  • This study provides a foundational resource for understanding sorghum's abiotic stress response mechanisms.
  • Identified candidate genes and regulatory elements for engineering climate-resilient sorghum varieties.