Related Experiment Video
Updated: Mar 31, 2026

Understanding the Changes in Mitochondrial Morphology through Dynamic and Three-dimensional Fluorescence Micrographs
Published on: August 15, 2025
An open-source code to analyze mitochondrial intracellular distribution from fluorescence microscopy images
Giovanna C Cavalcante1, Alicia J Kowaltowski1
1Departamento de Bioquímica, Instituto de Química, and Centro de Metabolismo CoMeta, Hospital Universitário, Universidade de São Paulo, São Paulo, Brazil.
Abstract:
Mitochondria have a plethora of roles in cells, many of which are related to dynamic changes in their size, shape, and intracellular location. Mitochondrial morphology is commonly assessed by microscopy with targeted fluorescent probes. However, tools to easily estimate mitochondrial localization within a cell are still lacking. A code was designed to estimate per-cell mitochondrial radial localization (perinuclear or peripheral) from fluorescence microscopy files in a variety of formats and using different mitochondrial markers (https://github.com/cavalcantegc/mito_localization.git). Three case studies with different cell types and stainings demonstrate that mitochondrial localization can be easily extracted and plotted with this code.

