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Colonization with Murine pks+ Escherichia coli under Non-Inflammatory Conditions
Claire McCartney1, Manuela M Santos2
1Nutrition and Microbiome Laboratory, Institut du Cancer de Montréal, Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM).
Journal of Visualized Experiments : Jove
|March 30, 2026
Summary
This study presents a mouse model for studying pks+ Escherichia coli colonization, a bacterium linked to colorectal cancer (CRC). The model shows that dietary inulin promotes the growth of this CRC-associated pathogen.
Area of Science:
- Microbiology
- Gastroenterology
- Oncology
Background:
- pks+ Escherichia coli strains produce colibactin, a genotoxin linked to colorectal cancer (CRC) development.
- Early-onset CRC is rising, particularly in younger populations, with pks+ E. coli implicated as a key factor.
- Colibactin causes DNA damage and mutations in pathways critical for cell proliferation and differentiation, driving CRC.
Purpose of the Study:
- To detail a reproducible method for establishing pks+ E. coli colonization in mice under non-inflammatory conditions.
- To investigate the effect of dietary fiber, specifically inulin, on pks+ E. coli colonization and growth in a murine model.
- To provide a valuable tool for studying preventative and therapeutic strategies against CRC linked to pks+ E. coli.
Main Methods:
- Oral gavage of antibiotic-conditioned C57BL/6 mice with the pks+ E. coli strain NC101.
- Assessment of colonization through quantification of lactose-fermenting gram-negative colony-forming units (CFUs) and quantitative PCR in stool samples.
- Analysis of the Enterobacteriaceae family abundance and clbP gene levels to confirm bacterial presence and activity.
Main Results:
- Successful colonization of mice with E. coli NC101 was achieved and validated.
- Supplementation with the dietary fiber inulin significantly promoted pks+ E. coli growth.
- Inulin supplementation led to increased CFU recovery, higher Enterobacteriaceae abundance, and elevated clbP gene levels.
Conclusions:
- The developed mouse model provides a robust platform for studying pks+ E. coli colonization and its role in CRC.
- Dietary inulin can enhance the growth of this CRC-associated pathobiont, suggesting potential dietary interactions in CRC development.
- This model facilitates research into targeted interventions for CRC prevention and treatment, focusing on the pathobiont E. coli.

