Subcellular reorganization upon phage infection reveals stepwise assembly of viral particles from membrane-associated

Simon Corroyer-Dulmont1,2,3,4,5, Audrey Labarde4, Vojtěch Pražák1,3,6

  • 1Centre for Structural Systems Biology (CSSB), Hamburg, Germany.

Nature Communications
|April 1, 2026
PubMed

Insights

Researchers reveal the intricate viral assembly process within bacteria using cryo-electron tomography. They observed the formation of specialized compartments for viral DNA replication and packaging, offering new insights into bacteriophage infection cycles.

Area of Science:

  • Microbiology
  • Structural Biology
  • Virology

Background:

  • Viruses are obligate intracellular parasites that hijack host cell machinery.
  • Bacteriophage infection mechanisms within the crowded bacterial cytoplasm are not fully understood.
  • Viral-induced compartments are crucial for genome replication and assembly.

Purpose of the Study:

  • To investigate the spatial organization and viral assembly of SPP1 phage-infected bacteria.
  • To elucidate the molecular mechanisms of viral replication and progeny production in situ.
  • To provide comprehensive insights into the complete viral assembly pathway within a cellular context.

Main Methods:

  • Electron cryo-tomography (cryo-ET) was used to visualize SPP1-infected bacteria under near-native conditions.
  • High-resolution imaging allowed for the detailed observation of viral structures and cellular reorganization.
  • In situ analysis provided mechanistic insights into viral DNA packaging and capsid assembly.

Main Results:

  • A large viral DNA (vDNA) compartment, devoid of ribosomes and lacking a surrounding membrane or shell, was identified.
  • Novel intermediates in virus assembly were observed, including procapsid precursors at the cytoplasmic membrane.
  • SPP1 infection involves stepwise vDNA packaging within the compartment and subsequent capsid maturation and storage.

Conclusions:

  • The study provides comprehensive mechanistic insights into the complete SPP1 viral assembly pathway directly within the bacterial cell.
  • Specific steps of viral assembly are coordinated within the reorganized bacterial cytoplasm.
  • The findings enhance our understanding of viral strategies for host cell manipulation and progeny production.

Related Concept Videos

Lytic Cycle of Bacteriophages01:30

Lytic Cycle of Bacteriophages

Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
80.1K
Viral Replication: Lytic Cycle01:20

Viral Replication: Lytic Cycle

Bacteriophages, or phages, are viruses that specifically infect bacteria. Among them, T-even bacteriophages, such as T4, exhibit a well-characterized lytic replication cycle in Escherichia coli (E. coli). This process ensures the rapid proliferation of the virus while ultimately leading to the destruction of the bacterial host.Attachment and DNA InjectionThe infection process begins with the recognition and binding of the T4 phage to the E. coli cell surface. Tail fibers of the phage...
2.6K
DNA Bacteriophages01:26

DNA Bacteriophages

Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
1.4K
What are Viruses?00:50

What are Viruses?

Overview
130.8K
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
17.1K
Viral Structure00:56

Viral Structure

Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
76.3K