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Updated: Apr 3, 2026

Following Cell-fate in E. coli After Infection by Phage Lambda
Published on: October 14, 2011
Subcellular reorganization upon phage infection reveals stepwise assembly of viral particles from membrane-associated
Simon Corroyer-Dulmont1,2,3,4,5, Audrey Labarde4, Vojtěch Pražák1,3,6
1Centre for Structural Systems Biology (CSSB), Hamburg, Germany.
Abstract:
Viruses are obligate intracellular parasites and viral infections lead to massive host cell rearrangement to support the rapid generation of progeny. Host take-over and remodelling include formation of viral-induced compartments for viral genome replication and/or assembly. While viruses infecting bacteria, bacteriophages or phages, have been extensively characterized in vitro, the molecular mechanisms underlying the viral cycle inside the crowded cytoplasm remain unclear. Here, we investigate the spatial reorganization of SPP1-infected bacteria under near-native conditions by electron cryo tomography. The most prominent feature is the formation of a large viral DNA (vDNA) compartment from which ribosomes are excluded. In SPP1 infection, there is no membrane nor proteinaceous shell surrounding these compartments. Also, we identify novel key intermediates in virus assembly: open precursors of procapsid lattice are found at the cytoplasmic membrane in a process that requires expression of the portal protein. Next, DNA-free procapsids relocate inside the vDNA compartment where vDNA is packed in a stepwise manner. Finally, DNA-filled capsids segregate to the periphery of the compartment for assembly completion and storage. Collectively, we provide comprehensive mechanistic insights into the complete viral assembly pathway of SPP1 directly in cellula and show how specific steps are coordinated inside the reorganized bacterial cell.
Insights
Researchers reveal the intricate viral assembly process within bacteria using cryo-electron tomography. They observed the formation of specialized compartments for viral DNA replication and packaging, offering new insights into bacteriophage infection cycles.
Area of Science:
- Microbiology
- Structural Biology
- Virology
Background:
- Viruses are obligate intracellular parasites that hijack host cell machinery.
- Bacteriophage infection mechanisms within the crowded bacterial cytoplasm are not fully understood.
- Viral-induced compartments are crucial for genome replication and assembly.
Purpose of the Study:
- To investigate the spatial organization and viral assembly of SPP1 phage-infected bacteria.
- To elucidate the molecular mechanisms of viral replication and progeny production in situ.
- To provide comprehensive insights into the complete viral assembly pathway within a cellular context.
Main Methods:
- Electron cryo-tomography (cryo-ET) was used to visualize SPP1-infected bacteria under near-native conditions.
- High-resolution imaging allowed for the detailed observation of viral structures and cellular reorganization.
- In situ analysis provided mechanistic insights into viral DNA packaging and capsid assembly.
Main Results:
- A large viral DNA (vDNA) compartment, devoid of ribosomes and lacking a surrounding membrane or shell, was identified.
- Novel intermediates in virus assembly were observed, including procapsid precursors at the cytoplasmic membrane.
- SPP1 infection involves stepwise vDNA packaging within the compartment and subsequent capsid maturation and storage.
Conclusions:
- The study provides comprehensive mechanistic insights into the complete SPP1 viral assembly pathway directly within the bacterial cell.
- Specific steps of viral assembly are coordinated within the reorganized bacterial cytoplasm.
- The findings enhance our understanding of viral strategies for host cell manipulation and progeny production.
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