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Related Concept Videos

Structure of Amines01:19

Structure of Amines

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The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are...
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Determination of Crystal Structures01:29

Determination of Crystal Structures

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In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
107
Structures of Carboxylic Acid Derivatives01:28

Structures of Carboxylic Acid Derivatives

4.1K
Structure of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
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Predicting Products: SN1 vs. SN202:27

Predicting Products: SN1 vs. SN2

17.8K
Nucleophilic substitution reactions of alkyl halides can proceed via an SN1 or an SN2 mechanism. While in SN2 reactions, the nucleophile attacks the substrate simultaneously as the leaving group departs, in SN1 reactions, the substrate first dissociates to give the carbocation intermediate. Various factors such as the structure of the substrate, the strength of the nucleophile, and the nature of the solvent promote one mechanism over the other.
With increased substitution on the alkyl halide,...
17.8K
Preparation of Amides01:29

Preparation of Amides

4.3K
Amides are synthesized by treating carboxylic acids with amines in the presence of dehydrating agents like dicyclohexylcarbodiimide (DCC).
The DCC-promoted synthesis of amides begins with the protonation of DCC by carboxylic acid. The protonation makes it a better acceptor. Next, the addition of carboxylate to the protonated carbodiimide gives a reactive acylating agent.
Subsequently, the amine acts as a nucleophile that attacks the acylating agent to form a tetrahedral intermediate. In the...
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Preparation of 1° Amines: Gabriel Synthesis01:28

Preparation of 1° Amines: Gabriel Synthesis

5.0K
Direct alkylation is not a suitable method for synthesizing amines because it produces polyalkylated products. Gabriel synthesis is the most preferred method to exclusively make primary amines. The method uses phthalimide, which contains a protected form of nitrogen that participates in alkylation only once to predominantly give primary amines.
Strong bases like NaOH or KOH deprotonate the phthalimide to form the corresponding anion, which acts as a nucleophile. Further, the anion attacks an...
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Deep learning generative model for conditional crystal structure prediction of sodium amide.

Rongfeng Guan1, Ang Liu1, Yang Song1

  • 1Department of Chemistry, Western University, London, Ontario, Canada.

Npj Computational Materials
|April 2, 2026
PubMed
Summary

We developed a deep learning framework to determine crystal structures of sodium amide (NaNH₂) under high pressure. This method successfully identified the high-pressure gamma phase, advancing hydrogen storage research.

Keywords:
ChemistryMaterials sciencePhysics

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Area of Science:

  • Materials Science
  • Crystallography
  • Computational Chemistry

Background:

  • Sodium amide (NaNH₂) exhibits complex high-pressure behavior crucial for hydrogen storage and synthesis.
  • Traditional structure prediction methods face challenges with NaNH₂'s complex energy surface and atomic rearrangements.
  • Accurate determination of high-pressure phases is vital for understanding material properties.

Purpose of the Study:

  • To develop an experimental-informed deep learning framework for crystal structure determination of NaNH₂ under high pressure.
  • To accurately identify and validate the structure of the high-pressure gamma phase of NaNH₂.
  • To elucidate the mechanisms behind pressure-induced phase transitions in NaNH₂.

Main Methods:

  • An experimental-informed deep learning generative framework using crystallographic constraints.
  • Conditional structure determination based on lattice parameters and space-group symmetry.
  • Energy-guided diffusion sampling and validation via synchrotron X-ray diffraction.

Main Results:

  • Successfully identified the high-pressure gamma phase of NaNH₂ as a P2₁/c structure (Z=16, 64 atoms).
  • The determined structure remained stable up to 14.0 GPa, confirmed by experimental validation.
  • Charge-density analysis revealed mechanisms driving phase transitions and stabilizing the gamma phase.

Conclusions:

  • The deep learning framework provides a general strategy for solving experimentally observed but structurally unknown phases in complex ionic materials.
  • This approach is effective when lattice metrics and symmetry constraints are available.
  • The findings enhance understanding of sodium amide's high-pressure behavior and its potential applications.