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Updated: Apr 4, 2026

Identifying Microglia and Peripheral Infiltrating Macrophages in the Injured Spinal Cords Using Flow Cytometry
Published on: June 24, 2025
Neuron-derived mitochondrial DNA (mtDNA) activates microglia via the Z-DNA binding protein 1 (ZBP1)-mediated pathway
Michela Marcatti1, Javier Allende Labastida2, Tony Zifeng Tang3
1Department of Neurology, University of Texas Medical Branch, Galveston, TX 77555.
Abstract:
Traumatic brain injury (TBI) is a leading cause of morbidity and mortality, with closed-head mild TBI (mTBI) accounting for nearly 90% of all cases. Early pathological events include microglial activation and neuronal mitochondrial dysfunction; however, their interconnection in mTBI remains poorly understood. Using a clinically relevant closed-head weight-drop mouse model, we identified mitochondrial DNA (mtDNA)-specific damage and increased expression of innate inflammatory markers (IL-1α/β, IL-6, TNFα, and CXCL1) in the cerebral cortex during the acute mTBI phase. Mechanistically, neurons subjected to in vitro injury model of mTBI exhibited early mtDNA-specific damage followed by mtDNA release via extracellular vesicles (EVs) together with the neuronal and exosomal markers. The released neuronal mtDNA induced a robust microglial activation mediated by binding to the cytoplasmic DNA/RNA sensor Z-DNA-binding protein 1 (ZBP1), triggering activation of the ZBP1-TBK1-IRF3 pathway resulted IL-6 and TNFα expression. An early, enhanced amounts of mtDNA, neuronal and exosomal markers were measured in EVs circulating in the blood of mice subjected to mTBI. ZBP1 knockout (KO) mice displayed suppressed microglial-but not astrocytic-activation in the cortex during the acute mTBI phase. We also measured accumulation of mtDNA-specific damage in the hippocampus during the postacute mTBI phase. The absence of microglial activation in ZBP1 KO mice exacerbated hippocampal-related memory deficits in the postacute mTBI phase. Collectively, our findings identify mtDNA-ZBP1 signaling as a key mechanism regulating microglial activation in mTBI.
Insights
Mitochondrial DNA (mtDNA) released from injured neurons activates brain immune cells (microglia) via Z-DNA-binding protein 1 (ZBP1) signaling after mild traumatic brain injury (mTBI). This pathway is crucial for regulating neuroinflammation and memory deficits following mTBI.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Traumatic brain injury (TBI), particularly mild TBI (mTBI), is a significant cause of death and disability.
- Early mTBI involves microglial activation and mitochondrial dysfunction, but their link is unclear.
Purpose of the Study:
- To investigate the interconnection between mitochondrial DNA (mtDNA) damage, release, and microglial activation in mTBI.
- To identify the molecular mechanisms driving neuroinflammation post-mTBI.
Main Methods:
- Utilized a weight-drop mouse model for closed-head mTBI and an in vitro neuronal injury model.
- Analyzed mtDNA damage, release via extracellular vesicles (EVs), and inflammatory marker expression.
- Employed Z-DNA-binding protein 1 (ZBP1) knockout (KO) mice to assess the role of ZBP1 in mTBI pathology.
Main Results:
- Identified mtDNA damage and release via EVs in acute mTBI, correlating with increased inflammatory markers.
- Demonstrated that released mtDNA activates microglia through ZBP1-TBK1-IRF3 signaling.
- Observed suppressed microglial activation in ZBP1 KO mice, which exacerbated memory deficits.
Conclusions:
- mtDNA-ZBP1 signaling is a key pathway regulating microglial activation in mTBI.
- Targeting this pathway may offer therapeutic strategies for mTBI-induced neuroinflammation and cognitive dysfunction.

