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NUPACK: Computational Nucleic Acid Analysis and Design

Mark E Fornace1,2,3, Jining Huang1, Cody T Newman1

  • 1Division of Biology & Biological Engineering, California Institute of Technology, Pasadena, California 91125, United States.

ACS Synthetic Biology
|April 2, 2026
PubMed
Abstract

Keywords:
2′OMe-RNADNARNAanalysisbase-pairingcomplex ensembleconcentrationdesignensemble defectequilibriumhybridizationmixed-materialsmultitube ensemblepartition functionreaction pathway engineeringsecondary structurestructural engineering including pseudoknotstest tube ensemble

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