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Hydrogel-Embedded Precision-Cut Lung Slices Recapitulate Fibrotic Gene Expression and Enable Therapeutic Response
Alicia E Tanneberger1, Rachel Blomberg1, Tvishi Yendamuri1
1Department of Biomedical Engineering, University of Colorado, Denver | Anschutz, Aurora, CO, USA.
Biorxiv : the Preprint Server for Biology
|April 3, 2026
Summary
Researchers developed a new method using hydrogel-embedded precision-cut lung slices (PCLS) to study pulmonary fibrosis ex vivo. This advanced model improves cell viability and mimics human fibrotic lung tissue for drug testing.
Area of Science:
- Biomedical Engineering
- Pulmonary Medicine
- Drug Discovery
Background:
- Precision-cut lung slices (PCLS) are valuable for studying lung tissue interactions and pre-clinical drug studies.
- Current ex vivo models for pulmonary fibrosis have short timelines due to cell viability issues, limiting chronic disease mechanism studies.
Purpose of the Study:
- To develop an improved ex vivo model for pulmonary fibrosis by embedding PCLS in engineered hydrogels.
- To extend the culture duration and enhance the study of chronic fibrotic processes.
Main Methods:
- PCLS were embedded in engineered hydrogels and exposed to pro-fibrotic cues.
- Cell viability was assessed over 3 weeks.
- Gene expression patterns were analyzed.
- The efficacy of Nintedanib treatment was evaluated.
Main Results:
- Hydrogel-embedded PCLS maintained over 80% cell viability for 3 weeks.
- Gene expression profiles in the model resembled those in human fibrotic lung tissue.
- Nintedanib treatment showed moderate reduction in fibroblast activation and influenced epithelial cell differentiation.
Conclusions:
- Hydrogel embedding significantly extends the viability of PCLS for ex vivo studies.
- This enhanced PCLS model provides a more robust platform for investigating pulmonary fibrosis mechanisms and evaluating therapeutic interventions.
- The model offers a novel approach for studying lung diseases and treatments using human tissues.

