Two autopsy cases of necrotizing soft-tissue infection in which the causative organism was inferred by 16S rRNA gene analysis
Related Experiment Video
Updated: Apr 4, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Mikiko Soejima1, Yoshiro Koda1
1Department of Forensic Medicine, Kurume University School of Medicine, Kurume, Japan.
Abstract:
Necrotizing soft-tissue infection (NSTI) is a rapidly progressing, life-threatening disease that is difficult to diagnose based on clinical findings alone. NSTI often does not present with pus at the infection site, so it may not be suspected during an autopsy. Consequently, bacterial cultures are not performed, which hinders identification of the causative organism. In this study, we attempted to amplify the 16S ribosomal RNA (16S rRNA) gene (also referred to as 16S rDNA) from blood samples collected during forensic autopsies in two cases where death was suspected to be due to NSTI, as determined by postmortem histological examination. These samples had been stored frozen for up to 170 months. However, bacteriological testing was not performed at the time of autopsy because NSTI was not suspected. In one case, a 16S rRNA gene was amplified for Vibrio vulnificus, and in the other, for Streptococcus pyogenes (Group A Streptococcus). Based on the autopsy findings and laboratory results, it was determined that the NSTI caused by these bacteria was the most likely cause of death. These results suggest that amplifying bacterial 16S rRNA genes from frozen postmortem blood samples may help in future cases.
Insights
Necrotizing soft-tissue infection (NSTI) is hard to diagnose postmortem. Amplifying bacterial 16S ribosomal RNA (16S rRNA) gene from frozen blood samples can identify causative bacteria like Vibrio vulnificus and Streptococcus pyogenes.
Area of Science:
- Forensic Pathology
- Microbiology
- Molecular Diagnostics
Background:
- Necrotizing soft-tissue infection (NSTI) is a severe, rapidly fatal condition.
- Clinical diagnosis of NSTI can be challenging, especially during forensic autopsies.
- Absence of pus and lack of suspicion for NSTI often lead to omitted bacterial cultures, hindering identification of pathogens.
Related Concept Videos
Modern Molecular Taxonomy
Applications of Molecular Taxonomy

